Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyoE and BNILDI_22735 are separated by 184 nucleotides BNILDI_22735 and BNILDI_22740 overlap by 17 nucleotides BNILDI_22740 and BNILDI_22745 are separated by 55 nucleotides
BNILDI_22730: cyoE - heme o synthase, at 4,575,002 to 4,575,892
cyoE
BNILDI_22735: BNILDI_22735 - DUF1778 domain-containing protein, at 4,576,077 to 4,576,388
_22735
BNILDI_22740: BNILDI_22740 - N-acetyltransferase, at 4,576,372 to 4,576,914
_22740
BNILDI_22745: BNILDI_22745 - sel1 repeat family protein, at 4,576,970 to 4,577,941
_22745
Position (kb) 4576
4577 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4575.534 kb on - strand, within cyoE at 4575.557 kb on - strand, within cyoE at 4575.597 kb on + strand, within cyoE at 4575.635 kb on + strand, within cyoE at 4575.695 kb on - strand, within cyoE at 4575.698 kb on + strand, within cyoE at 4575.736 kb on - strand, within cyoE at 4575.739 kb on + strand, within cyoE at 4575.757 kb on + strand, within cyoE at 4575.806 kb on - strand at 4575.869 kb on - strand at 4575.904 kb on + strand at 4575.919 kb on - strand at 4575.919 kb on - strand at 4576.024 kb on + strand at 4576.148 kb on + strand, within BNILDI_22735 at 4576.423 kb on + strand at 4576.424 kb on - strand at 4576.434 kb on + strand, within BNILDI_22740 at 4576.437 kb on + strand, within BNILDI_22740 at 4576.437 kb on + strand, within BNILDI_22740 at 4576.441 kb on + strand, within BNILDI_22740 at 4576.522 kb on - strand, within BNILDI_22740 at 4576.727 kb on + strand, within BNILDI_22740 at 4576.727 kb on + strand, within BNILDI_22740 at 4576.728 kb on - strand, within BNILDI_22740 at 4576.728 kb on - strand, within BNILDI_22740 at 4576.874 kb on + strand at 4576.912 kb on + strand at 4576.921 kb on - strand at 4577.058 kb on - strand at 4577.058 kb on - strand at 4577.344 kb on + strand, within BNILDI_22745 at 4577.402 kb on - strand, within BNILDI_22745 at 4577.428 kb on - strand, within BNILDI_22745 at 4577.475 kb on - strand, within BNILDI_22745 at 4577.484 kb on + strand, within BNILDI_22745 at 4577.484 kb on + strand, within BNILDI_22745 at 4577.485 kb on - strand, within BNILDI_22745 at 4577.503 kb on + strand, within BNILDI_22745 at 4577.554 kb on + strand, within BNILDI_22745 at 4577.578 kb on - strand, within BNILDI_22745 at 4577.718 kb on + strand, within BNILDI_22745 at 4577.719 kb on - strand, within BNILDI_22745 at 4577.783 kb on + strand, within BNILDI_22745 at 4577.811 kb on + strand, within BNILDI_22745 at 4577.824 kb on - strand, within BNILDI_22745 at 4577.867 kb on + strand at 4577.885 kb on + strand at 4577.900 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,575,534 - cyoE BNILDI_22730 0.60 -1.7 4,575,557 - cyoE BNILDI_22730 0.62 +0.0 4,575,597 + cyoE BNILDI_22730 0.67 -0.5 4,575,635 + cyoE BNILDI_22730 0.71 -0.5 4,575,695 - cyoE BNILDI_22730 0.78 -1.5 4,575,698 + cyoE BNILDI_22730 0.78 -2.4 4,575,736 - cyoE BNILDI_22730 0.82 -1.4 4,575,739 + cyoE BNILDI_22730 0.83 -0.1 4,575,757 + cyoE BNILDI_22730 0.85 -0.2 4,575,806 - -1.2 4,575,869 - +0.2 4,575,904 + +1.0 4,575,919 - +0.5 4,575,919 - -1.5 4,576,024 + +3.2 4,576,148 + BNILDI_22735 0.23 +0.2 4,576,423 + +0.7 4,576,424 - +1.4 4,576,434 + BNILDI_22740 0.11 -0.4 4,576,437 + BNILDI_22740 0.12 +0.3 4,576,437 + BNILDI_22740 0.12 -1.2 4,576,441 + BNILDI_22740 0.13 -0.4 4,576,522 - BNILDI_22740 0.28 -0.4 4,576,727 + BNILDI_22740 0.65 -0.6 4,576,727 + BNILDI_22740 0.65 -2.0 4,576,728 - BNILDI_22740 0.66 -0.3 4,576,728 - BNILDI_22740 0.66 +0.6 4,576,874 + +0.7 4,576,912 + -1.0 4,576,921 - +0.0 4,577,058 - -1.3 4,577,058 - -1.4 4,577,344 + BNILDI_22745 0.38 +0.6 4,577,402 - BNILDI_22745 0.44 -0.7 4,577,428 - BNILDI_22745 0.47 +0.7 4,577,475 - BNILDI_22745 0.52 +2.4 4,577,484 + BNILDI_22745 0.53 -0.6 4,577,484 + BNILDI_22745 0.53 -0.3 4,577,485 - BNILDI_22745 0.53 +0.7 4,577,503 + BNILDI_22745 0.55 +1.2 4,577,554 + BNILDI_22745 0.60 -0.5 4,577,578 - BNILDI_22745 0.63 +0.7 4,577,718 + BNILDI_22745 0.77 -0.1 4,577,719 - BNILDI_22745 0.77 -1.6 4,577,783 + BNILDI_22745 0.84 -0.5 4,577,811 + BNILDI_22745 0.87 +0.5 4,577,824 - BNILDI_22745 0.88 +0.8 4,577,867 + -0.1 4,577,885 + -0.2 4,577,900 + +0.5
Or see this region's nucleotide sequence