Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfdQ and yfdR are separated by 127 nucleotides yfdR and BNILDI_22180 overlap by 10 nucleotides BNILDI_22180 and yfdT overlap by 1 nucleotides yfdT and Arg_trna are separated by 291 nucleotides Arg_trna and fimZ are separated by 242 nucleotides
BNILDI_22170: yfdQ - Uncharacterized protein YfdQ, at 4,457,047 to 4,457,871
yfdQ
BNILDI_22175: yfdR - 5'-deoxynucleotidase, at 4,457,999 to 4,458,535
yfdR
BNILDI_22180: BNILDI_22180 - Uncharacterized protein YfdS, at 4,458,526 to 4,458,888
_22180
BNILDI_22185: yfdT - Uncharacterized protein YfdT, at 4,458,888 to 4,459,193
yfdT
BNILDI_22190: Arg_trna - tRNA-Arg(tct), at 4,459,485 to 4,459,561
_trna
BNILDI_22195: fimZ - fimbria biosynthesis transcriptional regulator FimZ, at 4,459,804 to 4,460,436
fimZ
Position (kb) 4458
4459 Strain fitness (log2 ratio) -2
-1
0
1 at 4457.545 kb on - strand, within yfdQ at 4457.712 kb on - strand, within yfdQ at 4457.724 kb on + strand, within yfdQ at 4457.905 kb on + strand at 4457.906 kb on - strand at 4457.985 kb on - strand at 4458.098 kb on - strand, within yfdR at 4458.267 kb on - strand, within yfdR at 4458.267 kb on - strand, within yfdR at 4458.329 kb on - strand, within yfdR at 4458.334 kb on + strand, within yfdR at 4458.335 kb on - strand, within yfdR at 4458.335 kb on - strand, within yfdR at 4458.335 kb on - strand, within yfdR at 4458.348 kb on - strand, within yfdR at 4458.491 kb on - strand at 4458.625 kb on - strand, within BNILDI_22180 at 4458.645 kb on + strand, within BNILDI_22180 at 4458.645 kb on + strand, within BNILDI_22180 at 4458.729 kb on + strand, within BNILDI_22180 at 4458.769 kb on + strand, within BNILDI_22180 at 4458.905 kb on + strand at 4458.918 kb on - strand at 4459.063 kb on + strand, within yfdT at 4459.064 kb on - strand, within yfdT at 4459.067 kb on - strand, within yfdT at 4459.067 kb on - strand, within yfdT at 4459.101 kb on + strand, within yfdT at 4459.101 kb on + strand, within yfdT at 4459.102 kb on - strand, within yfdT at 4459.102 kb on - strand, within yfdT at 4459.191 kb on + strand at 4459.192 kb on - strand at 4459.202 kb on + strand at 4459.202 kb on + strand at 4459.203 kb on - strand at 4459.203 kb on - strand at 4459.333 kb on + strand at 4459.346 kb on + strand at 4459.346 kb on + strand at 4459.350 kb on + strand at 4459.350 kb on + strand at 4459.350 kb on + strand at 4459.351 kb on - strand at 4459.428 kb on - strand at 4459.583 kb on - strand at 4459.735 kb on - strand at 4459.828 kb on - strand at 4459.833 kb on + strand at 4459.834 kb on - strand at 4459.842 kb on + strand at 4459.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,457,545 - yfdQ BNILDI_22170 0.60 -1.7 4,457,712 - yfdQ BNILDI_22170 0.81 +0.2 4,457,724 + yfdQ BNILDI_22170 0.82 -0.4 4,457,905 + +0.3 4,457,906 - -1.0 4,457,985 - +0.1 4,458,098 - yfdR BNILDI_22175 0.18 -0.4 4,458,267 - yfdR BNILDI_22175 0.50 -0.3 4,458,267 - yfdR BNILDI_22175 0.50 -0.1 4,458,329 - yfdR BNILDI_22175 0.61 -0.7 4,458,334 + yfdR BNILDI_22175 0.62 +0.8 4,458,335 - yfdR BNILDI_22175 0.63 +0.0 4,458,335 - yfdR BNILDI_22175 0.63 -0.0 4,458,335 - yfdR BNILDI_22175 0.63 -0.3 4,458,348 - yfdR BNILDI_22175 0.65 -0.3 4,458,491 - +0.7 4,458,625 - BNILDI_22180 0.27 +0.7 4,458,645 + BNILDI_22180 0.33 +0.0 4,458,645 + BNILDI_22180 0.33 -1.9 4,458,729 + BNILDI_22180 0.56 -0.5 4,458,769 + BNILDI_22180 0.67 -0.2 4,458,905 + +0.0 4,458,918 - -0.9 4,459,063 + yfdT BNILDI_22185 0.57 -0.3 4,459,064 - yfdT BNILDI_22185 0.58 +0.1 4,459,067 - yfdT BNILDI_22185 0.58 -0.9 4,459,067 - yfdT BNILDI_22185 0.58 +1.3 4,459,101 + yfdT BNILDI_22185 0.70 +0.1 4,459,101 + yfdT BNILDI_22185 0.70 +0.2 4,459,102 - yfdT BNILDI_22185 0.70 +0.0 4,459,102 - yfdT BNILDI_22185 0.70 -2.3 4,459,191 + -1.2 4,459,192 - +0.1 4,459,202 + -0.7 4,459,202 + -0.1 4,459,203 - +0.6 4,459,203 - -0.1 4,459,333 + -0.5 4,459,346 + -0.7 4,459,346 + +0.9 4,459,350 + -1.5 4,459,350 + -0.8 4,459,350 + +0.3 4,459,351 - -0.0 4,459,428 - -0.1 4,459,583 - +0.1 4,459,735 - +0.9 4,459,828 - +0.5 4,459,833 + -0.4 4,459,834 - +0.3 4,459,842 + -1.2 4,459,843 - -0.1
Or see this region's nucleotide sequence