Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_22160 and BNILDI_22165 are separated by 470 nucleotides BNILDI_22165 and yfdQ are separated by 65 nucleotides
BNILDI_22160: BNILDI_22160 - hypothetical protein, at 4,455,633 to 4,456,148
_22160
BNILDI_22165: BNILDI_22165 - CPS-53 (KpLE1) prophage protein, at 4,456,619 to 4,456,981
_22165
BNILDI_22170: yfdQ - Uncharacterized protein YfdQ, at 4,457,047 to 4,457,871
yfdQ
Position (kb)
4456
4457 Strain fitness (log2 ratio)
-2
-1
0
1 at 4455.629 kb on + strand at 4455.629 kb on + strand at 4455.629 kb on + strand at 4455.688 kb on + strand, within BNILDI_22160 at 4455.793 kb on - strand, within BNILDI_22160 at 4455.852 kb on + strand, within BNILDI_22160 at 4455.901 kb on + strand, within BNILDI_22160 at 4455.963 kb on + strand, within BNILDI_22160 at 4456.057 kb on - strand, within BNILDI_22160 at 4456.116 kb on - strand at 4456.155 kb on + strand at 4456.252 kb on + strand at 4456.264 kb on - strand at 4456.416 kb on + strand at 4456.427 kb on + strand at 4456.878 kb on - strand, within BNILDI_22165 at 4456.878 kb on - strand, within BNILDI_22165 at 4456.878 kb on - strand, within BNILDI_22165 at 4456.878 kb on - strand, within BNILDI_22165 at 4456.983 kb on - strand at 4457.094 kb on + strand at 4457.260 kb on - strand, within yfdQ at 4457.307 kb on + strand, within yfdQ at 4457.308 kb on - strand, within yfdQ at 4457.337 kb on + strand, within yfdQ at 4457.341 kb on - strand, within yfdQ at 4457.341 kb on - strand, within yfdQ at 4457.480 kb on - strand, within yfdQ at 4457.545 kb on - strand, within yfdQ at 4457.712 kb on - strand, within yfdQ at 4457.724 kb on + strand, within yfdQ at 4457.905 kb on + strand at 4457.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,455,629 + +0.1 4,455,629 + -0.7 4,455,629 + -0.3 4,455,688 + BNILDI_22160 0.11 +0.5 4,455,793 - BNILDI_22160 0.31 -0.2 4,455,852 + BNILDI_22160 0.42 -0.6 4,455,901 + BNILDI_22160 0.52 -0.5 4,455,963 + BNILDI_22160 0.64 -0.2 4,456,057 - BNILDI_22160 0.82 -2.6 4,456,116 - +0.1 4,456,155 + -0.9 4,456,252 + +0.3 4,456,264 - -0.1 4,456,416 + -0.1 4,456,427 + -0.4 4,456,878 - BNILDI_22165 0.71 -2.1 4,456,878 - BNILDI_22165 0.71 +1.4 4,456,878 - BNILDI_22165 0.71 +0.4 4,456,878 - BNILDI_22165 0.71 -0.6 4,456,983 - -0.4 4,457,094 + +0.2 4,457,260 - yfdQ BNILDI_22170 0.26 +0.1 4,457,307 + yfdQ BNILDI_22170 0.32 -0.1 4,457,308 - yfdQ BNILDI_22170 0.32 -0.6 4,457,337 + yfdQ BNILDI_22170 0.35 -0.2 4,457,341 - yfdQ BNILDI_22170 0.36 -2.3 4,457,341 - yfdQ BNILDI_22170 0.36 -0.5 4,457,480 - yfdQ BNILDI_22170 0.52 -0.1 4,457,545 - yfdQ BNILDI_22170 0.60 -1.7 4,457,712 - yfdQ BNILDI_22170 0.81 +0.2 4,457,724 + yfdQ BNILDI_22170 0.82 -0.4 4,457,905 + +0.3 4,457,906 - -1.0
Or see this region's nucleotide sequence