Strain Fitness in Escherichia coli ECRC62 around BNILDI_22165

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_22160 and BNILDI_22165 are separated by 470 nucleotidesBNILDI_22165 and yfdQ are separated by 65 nucleotides BNILDI_22160: BNILDI_22160 - hypothetical protein, at 4,455,633 to 4,456,148 _22160 BNILDI_22165: BNILDI_22165 - CPS-53 (KpLE1) prophage protein, at 4,456,619 to 4,456,981 _22165 BNILDI_22170: yfdQ - Uncharacterized protein YfdQ, at 4,457,047 to 4,457,871 yfdQ Position (kb) 4456 4457Strain fitness (log2 ratio) -2 -1 0 1at 4455.629 kb on + strandat 4455.629 kb on + strandat 4455.629 kb on + strandat 4455.688 kb on + strand, within BNILDI_22160at 4455.793 kb on - strand, within BNILDI_22160at 4455.852 kb on + strand, within BNILDI_22160at 4455.901 kb on + strand, within BNILDI_22160at 4455.963 kb on + strand, within BNILDI_22160at 4456.057 kb on - strand, within BNILDI_22160at 4456.116 kb on - strandat 4456.155 kb on + strandat 4456.252 kb on + strandat 4456.264 kb on - strandat 4456.416 kb on + strandat 4456.427 kb on + strandat 4456.878 kb on - strand, within BNILDI_22165at 4456.878 kb on - strand, within BNILDI_22165at 4456.878 kb on - strand, within BNILDI_22165at 4456.878 kb on - strand, within BNILDI_22165at 4456.983 kb on - strandat 4457.094 kb on + strandat 4457.260 kb on - strand, within yfdQat 4457.307 kb on + strand, within yfdQat 4457.308 kb on - strand, within yfdQat 4457.337 kb on + strand, within yfdQat 4457.341 kb on - strand, within yfdQat 4457.341 kb on - strand, within yfdQat 4457.480 kb on - strand, within yfdQat 4457.545 kb on - strand, within yfdQat 4457.712 kb on - strand, within yfdQat 4457.724 kb on + strand, within yfdQat 4457.905 kb on + strandat 4457.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,455,629 + +0.1
4,455,629 + -0.7
4,455,629 + -0.3
4,455,688 + BNILDI_22160 0.11 +0.5
4,455,793 - BNILDI_22160 0.31 -0.2
4,455,852 + BNILDI_22160 0.42 -0.6
4,455,901 + BNILDI_22160 0.52 -0.5
4,455,963 + BNILDI_22160 0.64 -0.2
4,456,057 - BNILDI_22160 0.82 -2.6
4,456,116 - +0.1
4,456,155 + -0.9
4,456,252 + +0.3
4,456,264 - -0.1
4,456,416 + -0.1
4,456,427 + -0.4
4,456,878 - BNILDI_22165 0.71 -2.1
4,456,878 - BNILDI_22165 0.71 +1.4
4,456,878 - BNILDI_22165 0.71 +0.4
4,456,878 - BNILDI_22165 0.71 -0.6
4,456,983 - -0.4
4,457,094 + +0.2
4,457,260 - yfdQ BNILDI_22170 0.26 +0.1
4,457,307 + yfdQ BNILDI_22170 0.32 -0.1
4,457,308 - yfdQ BNILDI_22170 0.32 -0.6
4,457,337 + yfdQ BNILDI_22170 0.35 -0.2
4,457,341 - yfdQ BNILDI_22170 0.36 -2.3
4,457,341 - yfdQ BNILDI_22170 0.36 -0.5
4,457,480 - yfdQ BNILDI_22170 0.52 -0.1
4,457,545 - yfdQ BNILDI_22170 0.60 -1.7
4,457,712 - yfdQ BNILDI_22170 0.81 +0.2
4,457,724 + yfdQ BNILDI_22170 0.82 -0.4
4,457,905 + +0.3
4,457,906 - -1.0

Or see this region's nucleotide sequence