Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cusC and cusR are separated by 156 nucleotides cusR and cusS overlap by 11 nucleotides cusS and vgrG are separated by 736 nucleotides
BNILDI_22090: cusC - Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC, at 4,441,812 to 4,443,194
cusC
BNILDI_22095: cusR - copper response regulator transcription factor CusR, at 4,443,351 to 4,444,034
cusR
BNILDI_22100: cusS - Cu(+)/Ag(+) sensor histidine kinase CusS, at 4,444,024 to 4,445,472
cusS
BNILDI_22105: vgrG - type VI secretion system tip protein VgrG, at 4,446,209 to 4,448,110
vgrG
Position (kb) 4444
4445
4446 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 4443.053 kb on + strand, within cusC at 4443.054 kb on - strand, within cusC at 4443.195 kb on - strand at 4443.320 kb on + strand at 4443.393 kb on + strand at 4443.483 kb on + strand, within cusR at 4443.484 kb on - strand, within cusR at 4443.507 kb on - strand, within cusR at 4443.929 kb on - strand, within cusR at 4444.033 kb on - strand at 4444.080 kb on + strand at 4444.164 kb on + strand at 4444.209 kb on + strand, within cusS at 4444.210 kb on - strand, within cusS at 4444.319 kb on - strand, within cusS at 4444.319 kb on - strand, within cusS at 4444.399 kb on + strand, within cusS at 4444.399 kb on + strand, within cusS at 4444.450 kb on - strand, within cusS at 4444.476 kb on + strand, within cusS at 4444.477 kb on - strand, within cusS at 4444.516 kb on + strand, within cusS at 4444.519 kb on - strand, within cusS at 4444.525 kb on + strand, within cusS at 4444.558 kb on + strand, within cusS at 4444.558 kb on + strand, within cusS at 4444.559 kb on - strand, within cusS at 4444.578 kb on + strand, within cusS at 4444.579 kb on - strand, within cusS at 4444.584 kb on + strand, within cusS at 4444.587 kb on + strand, within cusS at 4444.624 kb on - strand, within cusS at 4444.629 kb on - strand, within cusS at 4444.644 kb on + strand, within cusS at 4444.644 kb on + strand, within cusS at 4444.644 kb on + strand, within cusS at 4444.644 kb on + strand, within cusS at 4444.644 kb on + strand, within cusS at 4444.774 kb on - strand, within cusS at 4444.928 kb on - strand, within cusS at 4445.194 kb on - strand, within cusS at 4445.356 kb on - strand at 4445.475 kb on - strand at 4445.515 kb on - strand at 4446.099 kb on + strand at 4446.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,443,053 + cusC BNILDI_22090 0.90 +0.1 4,443,054 - cusC BNILDI_22090 0.90 -0.4 4,443,195 - -4.8 4,443,320 + +0.1 4,443,393 + +0.1 4,443,483 + cusR BNILDI_22095 0.19 +0.6 4,443,484 - cusR BNILDI_22095 0.19 +0.2 4,443,507 - cusR BNILDI_22095 0.23 +0.0 4,443,929 - cusR BNILDI_22095 0.85 -0.9 4,444,033 - +1.1 4,444,080 + +0.3 4,444,164 + +0.6 4,444,209 + cusS BNILDI_22100 0.13 -0.5 4,444,210 - cusS BNILDI_22100 0.13 -0.3 4,444,319 - cusS BNILDI_22100 0.20 -0.2 4,444,319 - cusS BNILDI_22100 0.20 -0.4 4,444,399 + cusS BNILDI_22100 0.26 +0.2 4,444,399 + cusS BNILDI_22100 0.26 -0.1 4,444,450 - cusS BNILDI_22100 0.29 -1.8 4,444,476 + cusS BNILDI_22100 0.31 +0.2 4,444,477 - cusS BNILDI_22100 0.31 +0.4 4,444,516 + cusS BNILDI_22100 0.34 +2.8 4,444,519 - cusS BNILDI_22100 0.34 +0.1 4,444,525 + cusS BNILDI_22100 0.35 -0.2 4,444,558 + cusS BNILDI_22100 0.37 -0.3 4,444,558 + cusS BNILDI_22100 0.37 -0.5 4,444,559 - cusS BNILDI_22100 0.37 -1.6 4,444,578 + cusS BNILDI_22100 0.38 -1.6 4,444,579 - cusS BNILDI_22100 0.38 -0.9 4,444,584 + cusS BNILDI_22100 0.39 +0.3 4,444,587 + cusS BNILDI_22100 0.39 -0.5 4,444,624 - cusS BNILDI_22100 0.41 +0.4 4,444,629 - cusS BNILDI_22100 0.42 +1.6 4,444,644 + cusS BNILDI_22100 0.43 +1.3 4,444,644 + cusS BNILDI_22100 0.43 +0.0 4,444,644 + cusS BNILDI_22100 0.43 -0.5 4,444,644 + cusS BNILDI_22100 0.43 -1.1 4,444,644 + cusS BNILDI_22100 0.43 -0.0 4,444,774 - cusS BNILDI_22100 0.52 -0.1 4,444,928 - cusS BNILDI_22100 0.62 -0.0 4,445,194 - cusS BNILDI_22100 0.81 -0.6 4,445,356 - +0.8 4,445,475 - +0.3 4,445,515 - -2.1 4,446,099 + +0.3 4,446,209 - +0.2
Or see this region's nucleotide sequence