Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt entC and fepB are separated by 374 nucleotides fepB and entS are separated by 3 nucleotides
BNILDI_21960: entC - isochorismate synthase 1, at 4,413,728 to 4,414,903
entC
BNILDI_21965: fepB - ferrienterobactin ABC transporter periplasmic binding protein, at 4,415,278 to 4,416,234
fepB
BNILDI_21970: entS - enterobactin exporter, iron-regulated, at 4,416,238 to 4,417,488
entS
Position (kb) 4415
4416
4417 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4414.304 kb on + strand, within entC at 4414.304 kb on + strand, within entC at 4414.305 kb on - strand, within entC at 4414.636 kb on + strand, within entC at 4414.638 kb on + strand, within entC at 4414.639 kb on - strand, within entC at 4414.639 kb on - strand, within entC at 4414.639 kb on - strand, within entC at 4414.639 kb on - strand, within entC at 4414.639 kb on - strand, within entC at 4414.835 kb on - strand at 4414.877 kb on + strand at 4414.897 kb on + strand at 4414.898 kb on - strand at 4414.987 kb on - strand at 4414.987 kb on - strand at 4415.256 kb on - strand at 4415.259 kb on - strand at 4415.261 kb on + strand at 4415.398 kb on - strand, within fepB at 4415.398 kb on - strand, within fepB at 4415.636 kb on + strand, within fepB at 4415.675 kb on - strand, within fepB at 4415.705 kb on + strand, within fepB at 4415.717 kb on - strand, within fepB at 4415.872 kb on + strand, within fepB at 4416.063 kb on - strand, within fepB at 4416.188 kb on - strand at 4416.219 kb on + strand at 4416.232 kb on + strand at 4416.240 kb on - strand at 4416.489 kb on + strand, within entS at 4416.489 kb on + strand, within entS at 4416.489 kb on + strand, within entS at 4416.489 kb on + strand, within entS at 4416.489 kb on + strand, within entS at 4416.489 kb on + strand, within entS at 4416.489 kb on + strand, within entS at 4416.489 kb on + strand, within entS at 4416.490 kb on - strand, within entS at 4416.490 kb on - strand, within entS at 4416.507 kb on + strand, within entS at 4416.639 kb on + strand, within entS at 4416.640 kb on - strand, within entS at 4416.757 kb on + strand, within entS at 4416.924 kb on + strand, within entS at 4416.928 kb on - strand, within entS at 4416.928 kb on - strand, within entS at 4416.928 kb on - strand, within entS at 4416.985 kb on + strand, within entS at 4417.058 kb on - strand, within entS at 4417.072 kb on + strand, within entS at 4417.145 kb on - strand, within entS at 4417.148 kb on + strand, within entS at 4417.148 kb on + strand, within entS at 4417.149 kb on - strand, within entS at 4417.149 kb on - strand, within entS
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,414,304 + entC BNILDI_21960 0.49 +1.1 4,414,304 + entC BNILDI_21960 0.49 -1.7 4,414,305 - entC BNILDI_21960 0.49 +0.5 4,414,636 + entC BNILDI_21960 0.77 +1.8 4,414,638 + entC BNILDI_21960 0.77 +0.0 4,414,639 - entC BNILDI_21960 0.77 -1.4 4,414,639 - entC BNILDI_21960 0.77 +0.0 4,414,639 - entC BNILDI_21960 0.77 -0.6 4,414,639 - entC BNILDI_21960 0.77 +0.1 4,414,639 - entC BNILDI_21960 0.77 -2.5 4,414,835 - -1.7 4,414,877 + -0.4 4,414,897 + +0.1 4,414,898 - +1.8 4,414,987 - -0.1 4,414,987 - +0.1 4,415,256 - -3.9 4,415,259 - -2.1 4,415,261 + +0.8 4,415,398 - fepB BNILDI_21965 0.13 -0.9 4,415,398 - fepB BNILDI_21965 0.13 -0.8 4,415,636 + fepB BNILDI_21965 0.37 +0.7 4,415,675 - fepB BNILDI_21965 0.41 -3.1 4,415,705 + fepB BNILDI_21965 0.45 -0.8 4,415,717 - fepB BNILDI_21965 0.46 -2.1 4,415,872 + fepB BNILDI_21965 0.62 +0.8 4,416,063 - fepB BNILDI_21965 0.82 +0.1 4,416,188 - -1.6 4,416,219 + -1.7 4,416,232 + -0.5 4,416,240 - +0.4 4,416,489 + entS BNILDI_21970 0.20 -0.2 4,416,489 + entS BNILDI_21970 0.20 -0.7 4,416,489 + entS BNILDI_21970 0.20 +1.0 4,416,489 + entS BNILDI_21970 0.20 +0.0 4,416,489 + entS BNILDI_21970 0.20 +4.0 4,416,489 + entS BNILDI_21970 0.20 +0.6 4,416,489 + entS BNILDI_21970 0.20 +0.8 4,416,489 + entS BNILDI_21970 0.20 -0.1 4,416,490 - entS BNILDI_21970 0.20 -2.4 4,416,490 - entS BNILDI_21970 0.20 -0.9 4,416,507 + entS BNILDI_21970 0.22 +0.4 4,416,639 + entS BNILDI_21970 0.32 +0.4 4,416,640 - entS BNILDI_21970 0.32 +0.1 4,416,757 + entS BNILDI_21970 0.41 +0.3 4,416,924 + entS BNILDI_21970 0.55 -0.0 4,416,928 - entS BNILDI_21970 0.55 -0.1 4,416,928 - entS BNILDI_21970 0.55 +0.6 4,416,928 - entS BNILDI_21970 0.55 -0.2 4,416,985 + entS BNILDI_21970 0.60 -0.3 4,417,058 - entS BNILDI_21970 0.66 -0.4 4,417,072 + entS BNILDI_21970 0.67 +1.1 4,417,145 - entS BNILDI_21970 0.73 +0.5 4,417,148 + entS BNILDI_21970 0.73 +0.4 4,417,148 + entS BNILDI_21970 0.73 -0.4 4,417,149 - entS BNILDI_21970 0.73 +0.4 4,417,149 - entS BNILDI_21970 0.73 +0.2
Or see this region's nucleotide sequence