Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmF and mcbA are separated by 275 nucleotides mcbA and fiu are separated by 263 nucleotides
BNILDI_20860: rlmF - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 4,201,081 to 4,202,007
rlmF
BNILDI_20865: mcbA - DUF1471 domain-containing protein, at 4,202,283 to 4,202,543
mcbA
BNILDI_20870: fiu - catecholate siderophore receptor Fiu, at 4,202,807 to 4,205,089
fiu
Position (kb) 4202
4203 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4201.414 kb on - strand, within rlmF at 4201.414 kb on - strand, within rlmF at 4201.631 kb on + strand, within rlmF at 4201.632 kb on - strand, within rlmF at 4201.639 kb on + strand, within rlmF at 4201.640 kb on - strand, within rlmF at 4201.640 kb on - strand, within rlmF at 4201.640 kb on - strand, within rlmF at 4201.660 kb on - strand, within rlmF at 4201.660 kb on - strand, within rlmF at 4201.660 kb on - strand, within rlmF at 4201.750 kb on - strand, within rlmF at 4201.751 kb on + strand, within rlmF at 4201.752 kb on - strand, within rlmF at 4201.752 kb on - strand, within rlmF at 4201.840 kb on - strand, within rlmF at 4201.840 kb on - strand, within rlmF at 4202.008 kb on - strand at 4202.008 kb on - strand at 4202.020 kb on + strand at 4202.020 kb on + strand at 4202.032 kb on + strand at 4202.063 kb on - strand at 4202.240 kb on - strand at 4202.240 kb on - strand at 4202.240 kb on - strand at 4202.240 kb on - strand at 4202.245 kb on + strand at 4202.246 kb on - strand at 4202.246 kb on - strand at 4202.264 kb on + strand at 4202.264 kb on + strand at 4202.265 kb on - strand at 4202.265 kb on - strand at 4202.268 kb on + strand at 4202.268 kb on + strand at 4202.364 kb on - strand, within mcbA at 4202.490 kb on - strand, within mcbA at 4202.555 kb on + strand at 4202.719 kb on - strand at 4202.730 kb on - strand at 4202.730 kb on - strand at 4202.785 kb on + strand at 4202.872 kb on + strand at 4202.872 kb on + strand at 4202.873 kb on - strand at 4202.966 kb on + strand at 4203.161 kb on + strand, within fiu at 4203.161 kb on + strand, within fiu at 4203.162 kb on - strand, within fiu at 4203.190 kb on + strand, within fiu at 4203.194 kb on + strand, within fiu at 4203.195 kb on - strand, within fiu at 4203.195 kb on - strand, within fiu at 4203.196 kb on + strand, within fiu at 4203.196 kb on + strand, within fiu at 4203.196 kb on + strand, within fiu at 4203.320 kb on - strand, within fiu at 4203.371 kb on - strand, within fiu
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,201,414 - rlmF BNILDI_20860 0.36 +0.3 4,201,414 - rlmF BNILDI_20860 0.36 +0.5 4,201,631 + rlmF BNILDI_20860 0.59 -0.5 4,201,632 - rlmF BNILDI_20860 0.59 +0.3 4,201,639 + rlmF BNILDI_20860 0.60 +0.0 4,201,640 - rlmF BNILDI_20860 0.60 +0.3 4,201,640 - rlmF BNILDI_20860 0.60 +0.4 4,201,640 - rlmF BNILDI_20860 0.60 +0.2 4,201,660 - rlmF BNILDI_20860 0.62 +3.0 4,201,660 - rlmF BNILDI_20860 0.62 -0.1 4,201,660 - rlmF BNILDI_20860 0.62 -1.2 4,201,750 - rlmF BNILDI_20860 0.72 -0.7 4,201,751 + rlmF BNILDI_20860 0.72 +0.0 4,201,752 - rlmF BNILDI_20860 0.72 -1.3 4,201,752 - rlmF BNILDI_20860 0.72 -1.0 4,201,840 - rlmF BNILDI_20860 0.82 +0.3 4,201,840 - rlmF BNILDI_20860 0.82 -1.0 4,202,008 - +0.5 4,202,008 - -1.2 4,202,020 + -0.1 4,202,020 + +0.0 4,202,032 + -1.2 4,202,063 - +0.5 4,202,240 - -0.1 4,202,240 - +0.6 4,202,240 - +1.2 4,202,240 - -0.2 4,202,245 + +1.9 4,202,246 - +0.4 4,202,246 - -0.4 4,202,264 + -0.1 4,202,264 + -0.1 4,202,265 - -1.4 4,202,265 - +1.8 4,202,268 + -0.0 4,202,268 + -0.2 4,202,364 - mcbA BNILDI_20865 0.31 +0.0 4,202,490 - mcbA BNILDI_20865 0.79 +0.9 4,202,555 + -0.3 4,202,719 - +0.5 4,202,730 - +0.2 4,202,730 - -1.4 4,202,785 + -0.2 4,202,872 + +0.4 4,202,872 + -0.1 4,202,873 - -0.1 4,202,966 + +0.1 4,203,161 + fiu BNILDI_20870 0.16 -0.0 4,203,161 + fiu BNILDI_20870 0.16 -1.9 4,203,162 - fiu BNILDI_20870 0.16 -0.4 4,203,190 + fiu BNILDI_20870 0.17 +0.3 4,203,194 + fiu BNILDI_20870 0.17 -0.0 4,203,195 - fiu BNILDI_20870 0.17 +0.1 4,203,195 - fiu BNILDI_20870 0.17 -0.1 4,203,196 + fiu BNILDI_20870 0.17 +0.2 4,203,196 + fiu BNILDI_20870 0.17 +0.7 4,203,196 + fiu BNILDI_20870 0.17 +0.9 4,203,320 - fiu BNILDI_20870 0.22 +1.0 4,203,371 - fiu BNILDI_20870 0.25 +0.6
Or see this region's nucleotide sequence