Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiR and mntR overlap by 4 nucleotides mntR and mntS are separated by 185 nucleotides mntS and opgE are separated by 271 nucleotides
BNILDI_20800: ybiR - Inner membrane protein YbiR, at 4,189,718 to 4,190,836
ybiR
BNILDI_20805: mntR - manganese-binding transcriptional regulator MntR, at 4,190,833 to 4,191,300
mntR
BNILDI_20810: mntS - manganase accumulation protein MntS, at 4,191,486 to 4,191,614
mntS
BNILDI_20815: opgE - phosphoethanolamine transferase, at 4,191,886 to 4,193,469
opgE
Position (kb) 4191
4192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4190.509 kb on + strand, within ybiR at 4190.527 kb on + strand, within ybiR at 4190.528 kb on - strand, within ybiR at 4190.557 kb on + strand, within ybiR at 4190.557 kb on + strand, within ybiR at 4190.585 kb on - strand, within ybiR at 4190.693 kb on + strand, within ybiR at 4190.969 kb on - strand, within mntR at 4191.179 kb on + strand, within mntR at 4191.179 kb on + strand, within mntR at 4191.190 kb on - strand, within mntR at 4191.327 kb on - strand at 4191.327 kb on - strand at 4191.327 kb on - strand at 4191.327 kb on - strand at 4191.331 kb on - strand at 4191.331 kb on - strand at 4191.331 kb on - strand at 4191.400 kb on + strand at 4191.409 kb on - strand at 4191.425 kb on + strand at 4191.426 kb on - strand at 4191.435 kb on + strand at 4191.435 kb on + strand at 4191.506 kb on + strand, within mntS at 4191.506 kb on + strand, within mntS at 4191.507 kb on - strand, within mntS at 4191.507 kb on - strand, within mntS at 4191.533 kb on + strand, within mntS at 4191.533 kb on + strand, within mntS at 4191.558 kb on - strand, within mntS at 4191.558 kb on - strand, within mntS at 4191.558 kb on - strand, within mntS at 4191.558 kb on - strand, within mntS at 4191.558 kb on - strand, within mntS at 4191.778 kb on + strand at 4191.780 kb on + strand at 4191.854 kb on + strand at 4191.873 kb on - strand at 4191.968 kb on + strand at 4191.971 kb on + strand at 4191.972 kb on - strand at 4192.149 kb on + strand, within opgE at 4192.217 kb on - strand, within opgE at 4192.222 kb on + strand, within opgE at 4192.223 kb on - strand, within opgE at 4192.235 kb on + strand, within opgE at 4192.325 kb on + strand, within opgE at 4192.383 kb on - strand, within opgE at 4192.386 kb on + strand, within opgE at 4192.386 kb on + strand, within opgE at 4192.531 kb on + strand, within opgE at 4192.540 kb on + strand, within opgE at 4192.540 kb on + strand, within opgE at 4192.541 kb on - strand, within opgE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,190,509 + ybiR BNILDI_20800 0.71 +0.9 4,190,527 + ybiR BNILDI_20800 0.72 +0.8 4,190,528 - ybiR BNILDI_20800 0.72 -0.0 4,190,557 + ybiR BNILDI_20800 0.75 -0.1 4,190,557 + ybiR BNILDI_20800 0.75 -0.2 4,190,585 - ybiR BNILDI_20800 0.77 -2.9 4,190,693 + ybiR BNILDI_20800 0.87 -0.2 4,190,969 - mntR BNILDI_20805 0.29 -0.6 4,191,179 + mntR BNILDI_20805 0.74 -0.1 4,191,179 + mntR BNILDI_20805 0.74 +0.6 4,191,190 - mntR BNILDI_20805 0.76 +0.9 4,191,327 - -0.2 4,191,327 - +2.9 4,191,327 - -0.7 4,191,327 - -0.6 4,191,331 - +0.3 4,191,331 - -0.1 4,191,331 - +0.7 4,191,400 + -1.3 4,191,409 - +0.3 4,191,425 + -0.3 4,191,426 - -0.4 4,191,435 + -0.2 4,191,435 + -0.5 4,191,506 + mntS BNILDI_20810 0.16 -0.0 4,191,506 + mntS BNILDI_20810 0.16 -0.1 4,191,507 - mntS BNILDI_20810 0.16 +0.2 4,191,507 - mntS BNILDI_20810 0.16 +1.9 4,191,533 + mntS BNILDI_20810 0.36 +0.6 4,191,533 + mntS BNILDI_20810 0.36 -0.3 4,191,558 - mntS BNILDI_20810 0.56 -0.9 4,191,558 - mntS BNILDI_20810 0.56 -0.1 4,191,558 - mntS BNILDI_20810 0.56 +0.2 4,191,558 - mntS BNILDI_20810 0.56 +3.0 4,191,558 - mntS BNILDI_20810 0.56 +1.0 4,191,778 + -1.3 4,191,780 + -0.4 4,191,854 + +0.3 4,191,873 - -1.0 4,191,968 + -0.3 4,191,971 + -0.7 4,191,972 - +0.5 4,192,149 + opgE BNILDI_20815 0.17 +0.3 4,192,217 - opgE BNILDI_20815 0.21 -2.3 4,192,222 + opgE BNILDI_20815 0.21 -0.1 4,192,223 - opgE BNILDI_20815 0.21 -0.7 4,192,235 + opgE BNILDI_20815 0.22 -1.5 4,192,325 + opgE BNILDI_20815 0.28 +0.5 4,192,383 - opgE BNILDI_20815 0.31 -1.2 4,192,386 + opgE BNILDI_20815 0.32 +1.5 4,192,386 + opgE BNILDI_20815 0.32 +1.2 4,192,531 + opgE BNILDI_20815 0.41 -0.8 4,192,540 + opgE BNILDI_20815 0.41 +0.1 4,192,540 + opgE BNILDI_20815 0.41 -0.2 4,192,541 - opgE BNILDI_20815 0.41 +0.1
Or see this region's nucleotide sequence