Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt helD and yccF are separated by 122 nucleotides yccF and yccS are separated by 9 nucleotides
BNILDI_19930: helD - DNA helicase IV, at 3,997,675 to 3,999,729
helD
BNILDI_19935: yccF - YccF domain-containing protein, at 3,999,852 to 4,000,298
yccF
BNILDI_19940: yccS - Inner membrane protein YccS, at 4,000,308 to 4,002,470
yccS
Position (kb) 3999
4000
4001 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3998.884 kb on - strand, within helD at 3998.886 kb on + strand, within helD at 3998.887 kb on - strand, within helD at 3998.932 kb on - strand, within helD at 3998.932 kb on - strand, within helD at 3999.201 kb on - strand, within helD at 3999.201 kb on - strand, within helD at 3999.201 kb on - strand, within helD at 3999.210 kb on + strand, within helD at 3999.258 kb on + strand, within helD at 3999.324 kb on + strand, within helD at 3999.325 kb on - strand, within helD at 3999.325 kb on - strand, within helD at 3999.738 kb on - strand at 3999.769 kb on - strand at 3999.839 kb on - strand at 3999.851 kb on + strand at 3999.852 kb on - strand at 3999.936 kb on - strand, within yccF at 3999.938 kb on + strand, within yccF at 3999.938 kb on + strand, within yccF at 3999.939 kb on - strand, within yccF at 3999.939 kb on - strand, within yccF at 3999.939 kb on - strand, within yccF at 4000.081 kb on + strand, within yccF at 4000.322 kb on - strand at 4000.322 kb on - strand at 4000.365 kb on + strand at 4000.429 kb on + strand at 4000.429 kb on + strand at 4000.558 kb on + strand, within yccS at 4000.650 kb on + strand, within yccS at 4000.689 kb on + strand, within yccS at 4000.689 kb on + strand, within yccS at 4000.689 kb on + strand, within yccS at 4000.690 kb on - strand, within yccS at 4000.694 kb on + strand, within yccS at 4000.694 kb on + strand, within yccS at 4000.694 kb on + strand, within yccS at 4000.694 kb on + strand, within yccS at 4000.695 kb on - strand, within yccS at 4000.713 kb on + strand, within yccS at 4000.714 kb on - strand, within yccS at 4000.714 kb on - strand, within yccS at 4000.740 kb on + strand, within yccS at 4000.741 kb on - strand, within yccS at 4000.781 kb on + strand, within yccS at 4000.781 kb on + strand, within yccS at 4000.782 kb on - strand, within yccS at 4000.782 kb on - strand, within yccS at 4000.990 kb on + strand, within yccS at 4000.990 kb on + strand, within yccS at 4001.037 kb on + strand, within yccS at 4001.037 kb on + strand, within yccS at 4001.037 kb on + strand, within yccS at 4001.037 kb on + strand, within yccS at 4001.038 kb on - strand, within yccS at 4001.038 kb on - strand, within yccS at 4001.081 kb on + strand, within yccS at 4001.082 kb on - strand, within yccS at 4001.088 kb on + strand, within yccS at 4001.190 kb on - strand, within yccS at 4001.247 kb on - strand, within yccS
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,998,884 - helD BNILDI_19930 0.59 +0.9 3,998,886 + helD BNILDI_19930 0.59 +0.2 3,998,887 - helD BNILDI_19930 0.59 -0.7 3,998,932 - helD BNILDI_19930 0.61 +0.1 3,998,932 - helD BNILDI_19930 0.61 -0.4 3,999,201 - helD BNILDI_19930 0.74 +0.1 3,999,201 - helD BNILDI_19930 0.74 +1.0 3,999,201 - helD BNILDI_19930 0.74 +0.9 3,999,210 + helD BNILDI_19930 0.75 +0.3 3,999,258 + helD BNILDI_19930 0.77 -0.3 3,999,324 + helD BNILDI_19930 0.80 +2.6 3,999,325 - helD BNILDI_19930 0.80 +0.6 3,999,325 - helD BNILDI_19930 0.80 +0.9 3,999,738 - +0.5 3,999,769 - +0.9 3,999,839 - -0.1 3,999,851 + -0.4 3,999,852 - -0.2 3,999,936 - yccF BNILDI_19935 0.19 -0.6 3,999,938 + yccF BNILDI_19935 0.19 +0.7 3,999,938 + yccF BNILDI_19935 0.19 -1.4 3,999,939 - yccF BNILDI_19935 0.19 +0.4 3,999,939 - yccF BNILDI_19935 0.19 -0.7 3,999,939 - yccF BNILDI_19935 0.19 +0.8 4,000,081 + yccF BNILDI_19935 0.51 -0.3 4,000,322 - -0.7 4,000,322 - +0.6 4,000,365 + -0.3 4,000,429 + +0.1 4,000,429 + -0.3 4,000,558 + yccS BNILDI_19940 0.12 -1.2 4,000,650 + yccS BNILDI_19940 0.16 +0.6 4,000,689 + yccS BNILDI_19940 0.18 +1.2 4,000,689 + yccS BNILDI_19940 0.18 -0.9 4,000,689 + yccS BNILDI_19940 0.18 +0.5 4,000,690 - yccS BNILDI_19940 0.18 -0.4 4,000,694 + yccS BNILDI_19940 0.18 +0.1 4,000,694 + yccS BNILDI_19940 0.18 -0.7 4,000,694 + yccS BNILDI_19940 0.18 -0.2 4,000,694 + yccS BNILDI_19940 0.18 -0.3 4,000,695 - yccS BNILDI_19940 0.18 -0.3 4,000,713 + yccS BNILDI_19940 0.19 -1.2 4,000,714 - yccS BNILDI_19940 0.19 +0.4 4,000,714 - yccS BNILDI_19940 0.19 +0.8 4,000,740 + yccS BNILDI_19940 0.20 +1.5 4,000,741 - yccS BNILDI_19940 0.20 -0.7 4,000,781 + yccS BNILDI_19940 0.22 +0.8 4,000,781 + yccS BNILDI_19940 0.22 -0.1 4,000,782 - yccS BNILDI_19940 0.22 +0.2 4,000,782 - yccS BNILDI_19940 0.22 -0.1 4,000,990 + yccS BNILDI_19940 0.32 -0.5 4,000,990 + yccS BNILDI_19940 0.32 -0.6 4,001,037 + yccS BNILDI_19940 0.34 +0.2 4,001,037 + yccS BNILDI_19940 0.34 +0.9 4,001,037 + yccS BNILDI_19940 0.34 -0.4 4,001,037 + yccS BNILDI_19940 0.34 -0.2 4,001,038 - yccS BNILDI_19940 0.34 -1.8 4,001,038 - yccS BNILDI_19940 0.34 -0.1 4,001,081 + yccS BNILDI_19940 0.36 -0.4 4,001,082 - yccS BNILDI_19940 0.36 +0.4 4,001,088 + yccS BNILDI_19940 0.36 +0.3 4,001,190 - yccS BNILDI_19940 0.41 +0.5 4,001,247 - yccS BNILDI_19940 0.43 -0.8
Or see this region's nucleotide sequence