Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydjJ and ydjI are separated by 20 nucleotides ydjI and rbsK are separated by 4 nucleotides rbsK and ydjG are separated by 9 nucleotides
BNILDI_16070: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 3,223,182 to 3,224,225
ydjJ
BNILDI_16075: ydjI - Uncharacterized protein YdjI, at 3,224,246 to 3,225,082
ydjI
BNILDI_16080: rbsK - sugar kinase, at 3,225,087 to 3,226,034
rbsK
BNILDI_16085: ydjG - NADH-dependent methylglyoxal reductase, at 3,226,044 to 3,227,024
ydjG
Position (kb) 3225
3226
3227 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3224.152 kb on + strand at 3224.311 kb on + strand at 3224.534 kb on - strand, within ydjI at 3224.702 kb on - strand, within ydjI at 3224.786 kb on + strand, within ydjI at 3224.788 kb on + strand, within ydjI at 3224.893 kb on + strand, within ydjI at 3225.000 kb on + strand at 3225.364 kb on + strand, within rbsK at 3225.544 kb on + strand, within rbsK at 3225.584 kb on + strand, within rbsK at 3225.899 kb on - strand, within rbsK at 3225.899 kb on - strand, within rbsK at 3225.950 kb on + strand at 3226.054 kb on + strand at 3226.158 kb on - strand, within ydjG at 3226.205 kb on + strand, within ydjG at 3226.233 kb on - strand, within ydjG at 3226.241 kb on + strand, within ydjG at 3226.285 kb on + strand, within ydjG at 3226.286 kb on - strand, within ydjG at 3226.288 kb on + strand, within ydjG at 3226.330 kb on + strand, within ydjG at 3226.429 kb on - strand, within ydjG at 3226.440 kb on + strand, within ydjG at 3226.441 kb on - strand, within ydjG at 3226.539 kb on - strand, within ydjG at 3226.541 kb on - strand, within ydjG at 3226.604 kb on + strand, within ydjG at 3226.660 kb on + strand, within ydjG at 3226.661 kb on - strand, within ydjG at 3226.961 kb on + strand at 3227.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,224,152 + +0.4 3,224,311 + +1.0 3,224,534 - ydjI BNILDI_16075 0.34 -0.1 3,224,702 - ydjI BNILDI_16075 0.54 +0.8 3,224,786 + ydjI BNILDI_16075 0.65 +0.3 3,224,788 + ydjI BNILDI_16075 0.65 -0.2 3,224,893 + ydjI BNILDI_16075 0.77 -0.6 3,225,000 + +0.3 3,225,364 + rbsK BNILDI_16080 0.29 +0.1 3,225,544 + rbsK BNILDI_16080 0.48 +0.7 3,225,584 + rbsK BNILDI_16080 0.52 -0.0 3,225,899 - rbsK BNILDI_16080 0.86 +0.1 3,225,899 - rbsK BNILDI_16080 0.86 +0.5 3,225,950 + -0.5 3,226,054 + -0.7 3,226,158 - ydjG BNILDI_16085 0.12 +0.5 3,226,205 + ydjG BNILDI_16085 0.16 -0.0 3,226,233 - ydjG BNILDI_16085 0.19 +2.0 3,226,241 + ydjG BNILDI_16085 0.20 +0.4 3,226,285 + ydjG BNILDI_16085 0.25 -0.4 3,226,286 - ydjG BNILDI_16085 0.25 -0.5 3,226,288 + ydjG BNILDI_16085 0.25 -0.2 3,226,330 + ydjG BNILDI_16085 0.29 +2.1 3,226,429 - ydjG BNILDI_16085 0.39 +0.1 3,226,440 + ydjG BNILDI_16085 0.40 -0.4 3,226,441 - ydjG BNILDI_16085 0.40 -0.1 3,226,539 - ydjG BNILDI_16085 0.50 +0.4 3,226,541 - ydjG BNILDI_16085 0.51 -0.3 3,226,604 + ydjG BNILDI_16085 0.57 +0.8 3,226,660 + ydjG BNILDI_16085 0.63 +0.2 3,226,661 - ydjG BNILDI_16085 0.63 +0.3 3,226,961 + -2.9 3,227,027 - -0.5
Or see this region's nucleotide sequence