Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nimT and nimR are separated by 99 nucleotides nimR and yeaL overlap by 44 nucleotides yeaL and yeaK are separated by 274 nucleotides
BNILDI_15990: nimT - 2-nitroimidazole transporter, at 3,205,159 to 3,206,340
nimT
BNILDI_15995: nimR - DNA-binding transcriptional regulator NimR, at 3,206,440 to 3,207,258
nimR
BNILDI_16000: yeaL - UPF0756 membrane protein CKO_01811, at 3,207,215 to 3,207,661
yeaL
BNILDI_16005: yeaK - mischarged aminoacyl-tRNA deacylase, at 3,207,936 to 3,208,439
yeaK
Position (kb) 3206
3207
3208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3205.659 kb on - strand, within nimT at 3205.735 kb on + strand, within nimT at 3205.735 kb on + strand, within nimT at 3205.919 kb on + strand, within nimT at 3205.919 kb on + strand, within nimT at 3205.920 kb on - strand, within nimT at 3205.991 kb on - strand, within nimT at 3206.019 kb on + strand, within nimT at 3206.029 kb on + strand, within nimT at 3206.032 kb on + strand, within nimT at 3206.033 kb on - strand, within nimT at 3206.033 kb on - strand, within nimT at 3206.033 kb on - strand, within nimT at 3206.036 kb on + strand, within nimT at 3206.037 kb on - strand, within nimT at 3206.037 kb on - strand, within nimT at 3206.083 kb on + strand, within nimT at 3206.210 kb on + strand, within nimT at 3206.268 kb on + strand at 3206.340 kb on + strand at 3206.341 kb on - strand at 3206.341 kb on - strand at 3206.390 kb on - strand at 3206.418 kb on - strand at 3206.540 kb on + strand, within nimR at 3206.570 kb on + strand, within nimR at 3206.571 kb on - strand, within nimR at 3206.576 kb on + strand, within nimR at 3206.576 kb on + strand, within nimR at 3206.576 kb on + strand, within nimR at 3206.576 kb on + strand, within nimR at 3206.576 kb on + strand, within nimR at 3206.577 kb on - strand, within nimR at 3206.577 kb on - strand, within nimR at 3206.577 kb on - strand, within nimR at 3206.577 kb on - strand, within nimR at 3206.577 kb on - strand, within nimR at 3206.577 kb on - strand, within nimR at 3206.589 kb on + strand, within nimR at 3206.664 kb on + strand, within nimR at 3206.664 kb on + strand, within nimR at 3206.664 kb on + strand, within nimR at 3206.665 kb on - strand, within nimR at 3207.065 kb on + strand, within nimR at 3207.066 kb on - strand, within nimR at 3207.110 kb on + strand, within nimR at 3207.156 kb on + strand, within nimR at 3207.156 kb on + strand, within nimR at 3207.157 kb on - strand, within nimR at 3207.163 kb on - strand, within nimR at 3207.163 kb on - strand, within nimR at 3207.163 kb on - strand, within nimR at 3207.201 kb on + strand at 3207.509 kb on + strand, within yeaL at 3207.601 kb on + strand, within yeaL at 3207.686 kb on + strand at 3207.696 kb on + strand at 3207.812 kb on + strand at 3207.813 kb on - strand at 3207.933 kb on + strand at 3207.934 kb on - strand at 3207.938 kb on - strand at 3208.005 kb on - strand, within yeaK at 3208.184 kb on + strand, within yeaK
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,205,659 - nimT BNILDI_15990 0.42 +0.3 3,205,735 + nimT BNILDI_15990 0.49 +0.4 3,205,735 + nimT BNILDI_15990 0.49 +2.9 3,205,919 + nimT BNILDI_15990 0.64 +0.1 3,205,919 + nimT BNILDI_15990 0.64 -0.5 3,205,920 - nimT BNILDI_15990 0.64 +0.0 3,205,991 - nimT BNILDI_15990 0.70 +0.3 3,206,019 + nimT BNILDI_15990 0.73 -2.1 3,206,029 + nimT BNILDI_15990 0.74 -2.2 3,206,032 + nimT BNILDI_15990 0.74 -0.5 3,206,033 - nimT BNILDI_15990 0.74 +0.0 3,206,033 - nimT BNILDI_15990 0.74 -0.1 3,206,033 - nimT BNILDI_15990 0.74 -0.3 3,206,036 + nimT BNILDI_15990 0.74 +1.7 3,206,037 - nimT BNILDI_15990 0.74 +0.9 3,206,037 - nimT BNILDI_15990 0.74 -0.5 3,206,083 + nimT BNILDI_15990 0.78 +0.8 3,206,210 + nimT BNILDI_15990 0.89 +1.3 3,206,268 + -1.5 3,206,340 + -0.2 3,206,341 - +0.0 3,206,341 - +0.4 3,206,390 - -0.0 3,206,418 - -1.4 3,206,540 + nimR BNILDI_15995 0.12 +0.2 3,206,570 + nimR BNILDI_15995 0.16 -0.9 3,206,571 - nimR BNILDI_15995 0.16 +1.4 3,206,576 + nimR BNILDI_15995 0.17 +0.3 3,206,576 + nimR BNILDI_15995 0.17 +0.1 3,206,576 + nimR BNILDI_15995 0.17 -0.0 3,206,576 + nimR BNILDI_15995 0.17 -0.8 3,206,576 + nimR BNILDI_15995 0.17 +0.4 3,206,577 - nimR BNILDI_15995 0.17 +2.3 3,206,577 - nimR BNILDI_15995 0.17 +0.0 3,206,577 - nimR BNILDI_15995 0.17 +0.5 3,206,577 - nimR BNILDI_15995 0.17 -2.4 3,206,577 - nimR BNILDI_15995 0.17 -0.0 3,206,577 - nimR BNILDI_15995 0.17 +1.9 3,206,589 + nimR BNILDI_15995 0.18 +0.3 3,206,664 + nimR BNILDI_15995 0.27 -3.1 3,206,664 + nimR BNILDI_15995 0.27 -0.6 3,206,664 + nimR BNILDI_15995 0.27 +0.5 3,206,665 - nimR BNILDI_15995 0.27 -3.0 3,207,065 + nimR BNILDI_15995 0.76 +0.7 3,207,066 - nimR BNILDI_15995 0.76 -0.2 3,207,110 + nimR BNILDI_15995 0.82 +0.1 3,207,156 + nimR BNILDI_15995 0.87 +0.1 3,207,156 + nimR BNILDI_15995 0.87 -2.4 3,207,157 - nimR BNILDI_15995 0.88 +1.2 3,207,163 - nimR BNILDI_15995 0.88 -0.2 3,207,163 - nimR BNILDI_15995 0.88 -0.2 3,207,163 - nimR BNILDI_15995 0.88 +0.0 3,207,201 + -0.2 3,207,509 + yeaL BNILDI_16000 0.66 -3.1 3,207,601 + yeaL BNILDI_16000 0.86 +1.2 3,207,686 + -0.3 3,207,696 + -0.7 3,207,812 + -0.4 3,207,813 - -0.7 3,207,933 + +0.3 3,207,934 - -0.5 3,207,938 - +0.2 3,208,005 - yeaK BNILDI_16005 0.14 +0.2 3,208,184 + yeaK BNILDI_16005 0.49 -1.0
Or see this region's nucleotide sequence