Strain Fitness in Escherichia coli ECRC62 around BNILDI_14840

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeW and cbtA overlap by 4 nucleotidescbtA and cbtA are separated by 88 nucleotidescbtA and yeeT are separated by 73 nucleotidesyeeT and tnp-ISL3 are separated by 352 nucleotides BNILDI_14830: yeeW - Protein YeeW, at 2,992,773 to 2,992,967 yeeW BNILDI_14835: cbtA - type IV toxin-antitoxin system toxin CbtA, at 2,992,964 to 2,993,338 cbtA BNILDI_14840: cbtA - type IV toxin-antitoxin system toxin CbtA, at 2,993,427 to 2,993,795 cbtA BNILDI_14845: yeeT - Uncharacterized protein YeeT, at 2,993,869 to 2,994,090 yeeT BNILDI_14850: tnp-ISL3 - ISL3 family transposase, at 2,994,443 to 2,995,822 tnp-ISL3 Position (kb) 2993 2994Strain fitness (log2 ratio) -2 -1 0 1 2at 2992.520 kb on + strandat 2992.525 kb on + strandat 2992.559 kb on + strandat 2992.562 kb on + strandat 2992.585 kb on - strandat 2992.709 kb on + strandat 2992.710 kb on - strandat 2992.710 kb on - strandat 2992.751 kb on + strandat 2992.751 kb on + strandat 2992.849 kb on + strand, within yeeWat 2992.936 kb on - strand, within yeeWat 2992.999 kb on + strandat 2993.000 kb on - strandat 2993.000 kb on - strandat 2993.013 kb on + strand, within cbtAat 2993.014 kb on - strand, within cbtAat 2993.014 kb on - strand, within cbtAat 2993.065 kb on + strand, within cbtAat 2993.072 kb on + strand, within cbtAat 2993.076 kb on - strand, within cbtAat 2993.239 kb on - strand, within cbtAat 2993.367 kb on - strandat 2993.518 kb on + strand, within cbtAat 2993.518 kb on + strand, within cbtAat 2993.977 kb on - strand, within yeeTat 2993.978 kb on + strand, within yeeTat 2993.978 kb on + strand, within yeeTat 2994.263 kb on + strandat 2994.466 kb on + strandat 2994.466 kb on + strandat 2994.477 kb on + strandat 2994.478 kb on - strandat 2994.484 kb on - strandat 2994.515 kb on - strandat 2994.517 kb on + strandat 2994.518 kb on - strandat 2994.634 kb on - strand, within tnp-ISL3at 2994.634 kb on - strand, within tnp-ISL3at 2994.634 kb on - strand, within tnp-ISL3at 2994.654 kb on + strand, within tnp-ISL3at 2994.664 kb on - strand, within tnp-ISL3

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,992,520 + -0.1
2,992,525 + +0.5
2,992,559 + -0.1
2,992,562 + -0.7
2,992,585 - -0.1
2,992,709 + -0.2
2,992,710 - -0.8
2,992,710 - +0.4
2,992,751 + +0.6
2,992,751 + -0.4
2,992,849 + yeeW BNILDI_14830 0.39 -0.5
2,992,936 - yeeW BNILDI_14830 0.84 +0.5
2,992,999 + -0.8
2,993,000 - -2.1
2,993,000 - -1.8
2,993,013 + cbtA BNILDI_14835 0.13 -0.2
2,993,014 - cbtA BNILDI_14835 0.13 +0.2
2,993,014 - cbtA BNILDI_14835 0.13 -0.1
2,993,065 + cbtA BNILDI_14835 0.27 +0.3
2,993,072 + cbtA BNILDI_14835 0.29 +0.8
2,993,076 - cbtA BNILDI_14835 0.30 +2.2
2,993,239 - cbtA BNILDI_14835 0.73 +0.2
2,993,367 - -0.1
2,993,518 + cbtA BNILDI_14840 0.25 -0.4
2,993,518 + cbtA BNILDI_14840 0.25 +0.3
2,993,977 - yeeT BNILDI_14845 0.49 -0.5
2,993,978 + yeeT BNILDI_14845 0.49 +1.1
2,993,978 + yeeT BNILDI_14845 0.49 +0.2
2,994,263 + +0.6
2,994,466 + +1.1
2,994,466 + -0.4
2,994,477 + -0.1
2,994,478 - -0.7
2,994,484 - +2.7
2,994,515 - +0.2
2,994,517 + +0.3
2,994,518 - +0.4
2,994,634 - tnp-ISL3 BNILDI_14850 0.14 +0.5
2,994,634 - tnp-ISL3 BNILDI_14850 0.14 +0.1
2,994,634 - tnp-ISL3 BNILDI_14850 0.14 +0.2
2,994,654 + tnp-ISL3 BNILDI_14850 0.15 +0.0
2,994,664 - tnp-ISL3 BNILDI_14850 0.16 -0.6

Or see this region's nucleotide sequence