Strain Fitness in Escherichia coli ECRC62 around BNILDI_14545

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwza and wzb are separated by 5 nucleotideswzb and wzc are separated by 2 nucleotides BNILDI_14540: wza - polysaccharide export protein Wza, at 2,937,241 to 2,938,380 wza BNILDI_14545: wzb - low molecular weight protein-tyrosine-phosphatase Wzb, at 2,938,386 to 2,938,829 wzb BNILDI_14550: wzc - tyrosine-protein kinase Wzc, at 2,938,832 to 2,940,994 wzc Position (kb) 2938 2939Strain fitness (log2 ratio) -3 -2 -1 0 1at 2937.428 kb on + strand, within wzaat 2937.520 kb on - strand, within wzaat 2937.520 kb on - strand, within wzaat 2937.616 kb on - strand, within wzaat 2937.623 kb on - strand, within wzaat 2937.628 kb on + strand, within wzaat 2937.628 kb on + strand, within wzaat 2937.648 kb on - strand, within wzaat 2937.695 kb on + strand, within wzaat 2937.730 kb on - strand, within wzaat 2937.761 kb on - strand, within wzaat 2937.761 kb on - strand, within wzaat 2937.763 kb on - strand, within wzaat 2937.780 kb on + strand, within wzaat 2937.781 kb on - strand, within wzaat 2937.781 kb on - strand, within wzaat 2937.809 kb on + strand, within wzaat 2938.188 kb on + strand, within wzaat 2938.189 kb on - strand, within wzaat 2938.203 kb on + strand, within wzaat 2938.255 kb on + strand, within wzaat 2938.267 kb on + strandat 2938.267 kb on + strandat 2938.267 kb on + strandat 2938.267 kb on + strandat 2938.267 kb on + strandat 2938.267 kb on + strandat 2938.268 kb on - strandat 2938.326 kb on + strandat 2938.326 kb on + strandat 2938.327 kb on - strandat 2938.391 kb on + strandat 2938.611 kb on + strand, within wzbat 2938.774 kb on + strand, within wzbat 2938.774 kb on + strand, within wzbat 2938.826 kb on - strandat 2938.828 kb on - strandat 2938.846 kb on - strandat 2938.973 kb on + strandat 2939.342 kb on - strand, within wzcat 2939.444 kb on + strand, within wzcat 2939.533 kb on + strand, within wzcat 2939.533 kb on + strand, within wzcat 2939.588 kb on + strand, within wzcat 2939.667 kb on + strand, within wzcat 2939.668 kb on - strand, within wzcat 2939.668 kb on - strand, within wzc

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,937,428 + wza BNILDI_14540 0.16 -1.4
2,937,520 - wza BNILDI_14540 0.24 -1.6
2,937,520 - wza BNILDI_14540 0.24 +0.8
2,937,616 - wza BNILDI_14540 0.33 +0.6
2,937,623 - wza BNILDI_14540 0.34 -0.0
2,937,628 + wza BNILDI_14540 0.34 +0.6
2,937,628 + wza BNILDI_14540 0.34 -0.1
2,937,648 - wza BNILDI_14540 0.36 +0.3
2,937,695 + wza BNILDI_14540 0.40 -0.2
2,937,730 - wza BNILDI_14540 0.43 +1.6
2,937,761 - wza BNILDI_14540 0.46 +0.3
2,937,761 - wza BNILDI_14540 0.46 -1.3
2,937,763 - wza BNILDI_14540 0.46 +0.3
2,937,780 + wza BNILDI_14540 0.47 -3.2
2,937,781 - wza BNILDI_14540 0.47 -0.1
2,937,781 - wza BNILDI_14540 0.47 -0.2
2,937,809 + wza BNILDI_14540 0.50 -0.1
2,938,188 + wza BNILDI_14540 0.83 -0.2
2,938,189 - wza BNILDI_14540 0.83 -0.6
2,938,203 + wza BNILDI_14540 0.84 +0.2
2,938,255 + wza BNILDI_14540 0.89 +0.1
2,938,267 + +1.0
2,938,267 + +1.0
2,938,267 + +0.4
2,938,267 + +0.8
2,938,267 + +0.4
2,938,267 + +0.8
2,938,268 - +0.4
2,938,326 + -0.1
2,938,326 + -0.3
2,938,327 - +1.7
2,938,391 + +1.0
2,938,611 + wzb BNILDI_14545 0.51 -0.4
2,938,774 + wzb BNILDI_14545 0.87 +0.9
2,938,774 + wzb BNILDI_14545 0.87 +0.4
2,938,826 - -1.3
2,938,828 - +0.1
2,938,846 - +1.4
2,938,973 + -0.4
2,939,342 - wzc BNILDI_14550 0.24 +0.6
2,939,444 + wzc BNILDI_14550 0.28 +0.2
2,939,533 + wzc BNILDI_14550 0.32 +1.6
2,939,533 + wzc BNILDI_14550 0.32 +1.4
2,939,588 + wzc BNILDI_14550 0.35 +0.4
2,939,667 + wzc BNILDI_14550 0.39 +0.2
2,939,668 - wzc BNILDI_14550 0.39 +1.1
2,939,668 - wzc BNILDI_14550 0.39 +1.1

Or see this region's nucleotide sequence