Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wza and wzb are separated by 5 nucleotides wzb and wzc are separated by 2 nucleotides
BNILDI_14540: wza - polysaccharide export protein Wza, at 2,937,241 to 2,938,380
wza
BNILDI_14545: wzb - low molecular weight protein-tyrosine-phosphatase Wzb, at 2,938,386 to 2,938,829
wzb
BNILDI_14550: wzc - tyrosine-protein kinase Wzc, at 2,938,832 to 2,940,994
wzc
Position (kb)
2938
2939 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2937.428 kb on + strand, within wza at 2937.520 kb on - strand, within wza at 2937.520 kb on - strand, within wza at 2937.616 kb on - strand, within wza at 2937.623 kb on - strand, within wza at 2937.628 kb on + strand, within wza at 2937.628 kb on + strand, within wza at 2937.648 kb on - strand, within wza at 2937.695 kb on + strand, within wza at 2937.730 kb on - strand, within wza at 2937.761 kb on - strand, within wza at 2937.761 kb on - strand, within wza at 2937.763 kb on - strand, within wza at 2937.780 kb on + strand, within wza at 2937.781 kb on - strand, within wza at 2937.781 kb on - strand, within wza at 2937.809 kb on + strand, within wza at 2938.188 kb on + strand, within wza at 2938.189 kb on - strand, within wza at 2938.203 kb on + strand, within wza at 2938.255 kb on + strand, within wza at 2938.267 kb on + strand at 2938.267 kb on + strand at 2938.267 kb on + strand at 2938.267 kb on + strand at 2938.267 kb on + strand at 2938.267 kb on + strand at 2938.268 kb on - strand at 2938.326 kb on + strand at 2938.326 kb on + strand at 2938.327 kb on - strand at 2938.391 kb on + strand at 2938.611 kb on + strand, within wzb at 2938.774 kb on + strand, within wzb at 2938.774 kb on + strand, within wzb at 2938.826 kb on - strand at 2938.828 kb on - strand at 2938.846 kb on - strand at 2938.973 kb on + strand at 2939.342 kb on - strand, within wzc at 2939.444 kb on + strand, within wzc at 2939.533 kb on + strand, within wzc at 2939.533 kb on + strand, within wzc at 2939.588 kb on + strand, within wzc at 2939.667 kb on + strand, within wzc at 2939.668 kb on - strand, within wzc at 2939.668 kb on - strand, within wzc
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,937,428 + wza BNILDI_14540 0.16 -1.4 2,937,520 - wza BNILDI_14540 0.24 -1.6 2,937,520 - wza BNILDI_14540 0.24 +0.8 2,937,616 - wza BNILDI_14540 0.33 +0.6 2,937,623 - wza BNILDI_14540 0.34 -0.0 2,937,628 + wza BNILDI_14540 0.34 +0.6 2,937,628 + wza BNILDI_14540 0.34 -0.1 2,937,648 - wza BNILDI_14540 0.36 +0.3 2,937,695 + wza BNILDI_14540 0.40 -0.2 2,937,730 - wza BNILDI_14540 0.43 +1.6 2,937,761 - wza BNILDI_14540 0.46 +0.3 2,937,761 - wza BNILDI_14540 0.46 -1.3 2,937,763 - wza BNILDI_14540 0.46 +0.3 2,937,780 + wza BNILDI_14540 0.47 -3.2 2,937,781 - wza BNILDI_14540 0.47 -0.1 2,937,781 - wza BNILDI_14540 0.47 -0.2 2,937,809 + wza BNILDI_14540 0.50 -0.1 2,938,188 + wza BNILDI_14540 0.83 -0.2 2,938,189 - wza BNILDI_14540 0.83 -0.6 2,938,203 + wza BNILDI_14540 0.84 +0.2 2,938,255 + wza BNILDI_14540 0.89 +0.1 2,938,267 + +1.0 2,938,267 + +1.0 2,938,267 + +0.4 2,938,267 + +0.8 2,938,267 + +0.4 2,938,267 + +0.8 2,938,268 - +0.4 2,938,326 + -0.1 2,938,326 + -0.3 2,938,327 - +1.7 2,938,391 + +1.0 2,938,611 + wzb BNILDI_14545 0.51 -0.4 2,938,774 + wzb BNILDI_14545 0.87 +0.9 2,938,774 + wzb BNILDI_14545 0.87 +0.4 2,938,826 - -1.3 2,938,828 - +0.1 2,938,846 - +1.4 2,938,973 + -0.4 2,939,342 - wzc BNILDI_14550 0.24 +0.6 2,939,444 + wzc BNILDI_14550 0.28 +0.2 2,939,533 + wzc BNILDI_14550 0.32 +1.6 2,939,533 + wzc BNILDI_14550 0.32 +1.4 2,939,588 + wzc BNILDI_14550 0.35 +0.4 2,939,667 + wzc BNILDI_14550 0.39 +0.2 2,939,668 - wzc BNILDI_14550 0.39 +1.1 2,939,668 - wzc BNILDI_14550 0.39 +1.1
Or see this region's nucleotide sequence