Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_11515 and BNILDI_11520 are separated by 174 nucleotides BNILDI_11520 and BNILDI_11525 are separated by 22 nucleotides BNILDI_11525 and BNILDI_11530 are separated by 67 nucleotides BNILDI_11530 and dksA overlap by 1 nucleotides dksA and BNILDI_11540 overlap by 4 nucleotides BNILDI_11540 and dam overlap by 4 nucleotides
BNILDI_11515: BNILDI_11515 - Protein ORFb in retron Ec67, at 2,317,901 to 2,318,410
_11515
BNILDI_11520: BNILDI_11520 - hypothetical protein, at 2,318,585 to 2,318,809
_11520
BNILDI_11525: BNILDI_11525 - Protein ORFc in retron Ec67, at 2,318,832 to 2,319,173
_11525
BNILDI_11530: BNILDI_11530 - DUF2732 domain-containing protein, at 2,319,241 to 2,319,474
_11530
BNILDI_11535: dksA - Prokaryotic dksA/traR C4-type zinc finger, at 2,319,474 to 2,319,701
dksA
BNILDI_11540: BNILDI_11540 - Protein ORFd in retron Ec67, at 2,319,698 to 2,320,000
_11540
BNILDI_11545: dam - Retron Ec67 DNA adenine methylase, at 2,319,997 to 2,320,854
dam
Position (kb)
2319
2320 Strain fitness (log2 ratio)
-2
-1
0
1 at 2318.245 kb on - strand, within BNILDI_11515 at 2318.272 kb on + strand, within BNILDI_11515 at 2318.284 kb on + strand, within BNILDI_11515 at 2318.284 kb on + strand, within BNILDI_11515 at 2318.285 kb on - strand, within BNILDI_11515 at 2318.285 kb on - strand, within BNILDI_11515 at 2318.418 kb on - strand at 2318.455 kb on + strand at 2318.478 kb on + strand at 2318.825 kb on - strand at 2318.841 kb on - strand at 2319.298 kb on - strand, within BNILDI_11530 at 2319.530 kb on + strand, within dksA at 2319.644 kb on + strand, within dksA at 2319.698 kb on - strand at 2319.740 kb on - strand, within BNILDI_11540 at 2319.975 kb on - strand at 2320.207 kb on - strand, within dam at 2320.259 kb on - strand, within dam at 2320.279 kb on - strand, within dam at 2320.319 kb on - strand, within dam at 2320.328 kb on - strand, within dam at 2320.471 kb on - strand, within dam
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,318,245 - BNILDI_11515 0.67 -1.0 2,318,272 + BNILDI_11515 0.73 -0.7 2,318,284 + BNILDI_11515 0.75 +1.0 2,318,284 + BNILDI_11515 0.75 -0.9 2,318,285 - BNILDI_11515 0.75 -0.1 2,318,285 - BNILDI_11515 0.75 -0.6 2,318,418 - -0.1 2,318,455 + -0.3 2,318,478 + -0.0 2,318,825 - -0.0 2,318,841 - +0.6 2,319,298 - BNILDI_11530 0.24 +0.6 2,319,530 + dksA BNILDI_11535 0.25 +0.2 2,319,644 + dksA BNILDI_11535 0.75 +0.2 2,319,698 - +0.6 2,319,740 - BNILDI_11540 0.14 -0.6 2,319,975 - -2.4 2,320,207 - dam BNILDI_11545 0.24 -0.2 2,320,259 - dam BNILDI_11545 0.31 -0.7 2,320,279 - dam BNILDI_11545 0.33 -1.5 2,320,319 - dam BNILDI_11545 0.38 +0.5 2,320,328 - dam BNILDI_11545 0.39 +0.4 2,320,471 - dam BNILDI_11545 0.55 +0.7
Or see this region's nucleotide sequence