Strain Fitness in Escherichia coli ECRC62 around BNILDI_11530

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_11515 and BNILDI_11520 are separated by 174 nucleotidesBNILDI_11520 and BNILDI_11525 are separated by 22 nucleotidesBNILDI_11525 and BNILDI_11530 are separated by 67 nucleotidesBNILDI_11530 and dksA overlap by 1 nucleotidesdksA and BNILDI_11540 overlap by 4 nucleotidesBNILDI_11540 and dam overlap by 4 nucleotides BNILDI_11515: BNILDI_11515 - Protein ORFb in retron Ec67, at 2,317,901 to 2,318,410 _11515 BNILDI_11520: BNILDI_11520 - hypothetical protein, at 2,318,585 to 2,318,809 _11520 BNILDI_11525: BNILDI_11525 - Protein ORFc in retron Ec67, at 2,318,832 to 2,319,173 _11525 BNILDI_11530: BNILDI_11530 - DUF2732 domain-containing protein, at 2,319,241 to 2,319,474 _11530 BNILDI_11535: dksA - Prokaryotic dksA/traR C4-type zinc finger, at 2,319,474 to 2,319,701 dksA BNILDI_11540: BNILDI_11540 - Protein ORFd in retron Ec67, at 2,319,698 to 2,320,000 _11540 BNILDI_11545: dam - Retron Ec67 DNA adenine methylase, at 2,319,997 to 2,320,854 dam Position (kb) 2319 2320Strain fitness (log2 ratio) -2 -1 0 1at 2318.245 kb on - strand, within BNILDI_11515at 2318.272 kb on + strand, within BNILDI_11515at 2318.284 kb on + strand, within BNILDI_11515at 2318.284 kb on + strand, within BNILDI_11515at 2318.285 kb on - strand, within BNILDI_11515at 2318.285 kb on - strand, within BNILDI_11515at 2318.418 kb on - strandat 2318.455 kb on + strandat 2318.478 kb on + strandat 2318.825 kb on - strandat 2318.841 kb on - strandat 2319.298 kb on - strand, within BNILDI_11530at 2319.530 kb on + strand, within dksAat 2319.644 kb on + strand, within dksAat 2319.698 kb on - strandat 2319.740 kb on - strand, within BNILDI_11540at 2319.975 kb on - strandat 2320.207 kb on - strand, within damat 2320.259 kb on - strand, within damat 2320.279 kb on - strand, within damat 2320.319 kb on - strand, within damat 2320.328 kb on - strand, within damat 2320.471 kb on - strand, within dam

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,318,245 - BNILDI_11515 0.67 -1.0
2,318,272 + BNILDI_11515 0.73 -0.7
2,318,284 + BNILDI_11515 0.75 +1.0
2,318,284 + BNILDI_11515 0.75 -0.9
2,318,285 - BNILDI_11515 0.75 -0.1
2,318,285 - BNILDI_11515 0.75 -0.6
2,318,418 - -0.1
2,318,455 + -0.3
2,318,478 + -0.0
2,318,825 - -0.0
2,318,841 - +0.6
2,319,298 - BNILDI_11530 0.24 +0.6
2,319,530 + dksA BNILDI_11535 0.25 +0.2
2,319,644 + dksA BNILDI_11535 0.75 +0.2
2,319,698 - +0.6
2,319,740 - BNILDI_11540 0.14 -0.6
2,319,975 - -2.4
2,320,207 - dam BNILDI_11545 0.24 -0.2
2,320,259 - dam BNILDI_11545 0.31 -0.7
2,320,279 - dam BNILDI_11545 0.33 -1.5
2,320,319 - dam BNILDI_11545 0.38 +0.5
2,320,328 - dam BNILDI_11545 0.39 +0.4
2,320,471 - dam BNILDI_11545 0.55 +0.7

Or see this region's nucleotide sequence