Strain Fitness in Escherichia coli ECRC62 around BNILDI_11495

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBNILDI_11490 and BNILDI_11495 are separated by 54 nucleotidesBNILDI_11495 and xerD overlap by 4 nucleotides BNILDI_11490: BNILDI_11490 - hypothetical protein, at 2,313,478 to 2,314,671 _11490 BNILDI_11495: BNILDI_11495 - hypothetical protein, at 2,314,726 to 2,315,853 _11495 BNILDI_11500: xerD - integrase, at 2,315,850 to 2,316,869 xerD Position (kb) 2314 2315 2316Strain fitness (log2 ratio) -2 -1 0 1 2at 2313.769 kb on - strand, within BNILDI_11490at 2313.906 kb on + strand, within BNILDI_11490at 2314.157 kb on - strand, within BNILDI_11490at 2314.238 kb on - strand, within BNILDI_11490at 2314.394 kb on + strand, within BNILDI_11490at 2315.234 kb on + strand, within BNILDI_11495at 2315.297 kb on + strand, within BNILDI_11495at 2315.356 kb on - strand, within BNILDI_11495at 2315.418 kb on - strand, within BNILDI_11495at 2315.420 kb on + strand, within BNILDI_11495at 2315.921 kb on - strandat 2315.974 kb on - strand, within xerDat 2315.998 kb on + strand, within xerDat 2316.103 kb on - strand, within xerDat 2316.134 kb on - strand, within xerDat 2316.147 kb on + strand, within xerDat 2316.188 kb on - strand, within xerDat 2316.200 kb on - strand, within xerDat 2316.203 kb on + strand, within xerDat 2316.283 kb on - strand, within xerDat 2316.326 kb on + strand, within xerDat 2316.327 kb on - strand, within xerDat 2316.372 kb on - strand, within xerDat 2316.372 kb on - strand, within xerDat 2316.448 kb on - strand, within xerDat 2316.448 kb on - strand, within xerDat 2316.494 kb on + strand, within xerDat 2316.495 kb on - strand, within xerDat 2316.495 kb on - strand, within xerDat 2316.495 kb on - strand, within xerDat 2316.528 kb on + strand, within xerDat 2316.605 kb on + strand, within xerDat 2316.605 kb on + strand, within xerDat 2316.606 kb on - strand, within xerD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
2,313,769 - BNILDI_11490 0.24 +0.1
2,313,906 + BNILDI_11490 0.36 -0.0
2,314,157 - BNILDI_11490 0.57 -0.1
2,314,238 - BNILDI_11490 0.64 -1.0
2,314,394 + BNILDI_11490 0.77 +0.3
2,315,234 + BNILDI_11495 0.45 +0.1
2,315,297 + BNILDI_11495 0.51 +0.5
2,315,356 - BNILDI_11495 0.56 +0.0
2,315,418 - BNILDI_11495 0.61 -0.7
2,315,420 + BNILDI_11495 0.62 +0.9
2,315,921 - -2.4
2,315,974 - xerD BNILDI_11500 0.12 +0.2
2,315,998 + xerD BNILDI_11500 0.15 -0.2
2,316,103 - xerD BNILDI_11500 0.25 +0.5
2,316,134 - xerD BNILDI_11500 0.28 +0.4
2,316,147 + xerD BNILDI_11500 0.29 +0.7
2,316,188 - xerD BNILDI_11500 0.33 +0.0
2,316,200 - xerD BNILDI_11500 0.34 +0.1
2,316,203 + xerD BNILDI_11500 0.35 +0.1
2,316,283 - xerD BNILDI_11500 0.42 +1.5
2,316,326 + xerD BNILDI_11500 0.47 -0.0
2,316,327 - xerD BNILDI_11500 0.47 +0.3
2,316,372 - xerD BNILDI_11500 0.51 +1.8
2,316,372 - xerD BNILDI_11500 0.51 -0.2
2,316,448 - xerD BNILDI_11500 0.59 -0.1
2,316,448 - xerD BNILDI_11500 0.59 -1.3
2,316,494 + xerD BNILDI_11500 0.63 -0.3
2,316,495 - xerD BNILDI_11500 0.63 -0.8
2,316,495 - xerD BNILDI_11500 0.63 +0.3
2,316,495 - xerD BNILDI_11500 0.63 +0.0
2,316,528 + xerD BNILDI_11500 0.66 +0.3
2,316,605 + xerD BNILDI_11500 0.74 +0.1
2,316,605 + xerD BNILDI_11500 0.74 -0.4
2,316,606 - xerD BNILDI_11500 0.74 +0.1

Or see this region's nucleotide sequence