Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_11490 and BNILDI_11495 are separated by 54 nucleotides BNILDI_11495 and xerD overlap by 4 nucleotides
BNILDI_11490: BNILDI_11490 - hypothetical protein, at 2,313,478 to 2,314,671
_11490
BNILDI_11495: BNILDI_11495 - hypothetical protein, at 2,314,726 to 2,315,853
_11495
BNILDI_11500: xerD - integrase, at 2,315,850 to 2,316,869
xerD
Position (kb)
2314
2315
2316 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2313.769 kb on - strand, within BNILDI_11490 at 2313.906 kb on + strand, within BNILDI_11490 at 2314.157 kb on - strand, within BNILDI_11490 at 2314.238 kb on - strand, within BNILDI_11490 at 2314.394 kb on + strand, within BNILDI_11490 at 2315.234 kb on + strand, within BNILDI_11495 at 2315.297 kb on + strand, within BNILDI_11495 at 2315.356 kb on - strand, within BNILDI_11495 at 2315.418 kb on - strand, within BNILDI_11495 at 2315.420 kb on + strand, within BNILDI_11495 at 2315.921 kb on - strand at 2315.974 kb on - strand, within xerD at 2315.998 kb on + strand, within xerD at 2316.103 kb on - strand, within xerD at 2316.134 kb on - strand, within xerD at 2316.147 kb on + strand, within xerD at 2316.188 kb on - strand, within xerD at 2316.200 kb on - strand, within xerD at 2316.203 kb on + strand, within xerD at 2316.283 kb on - strand, within xerD at 2316.326 kb on + strand, within xerD at 2316.327 kb on - strand, within xerD at 2316.372 kb on - strand, within xerD at 2316.372 kb on - strand, within xerD at 2316.448 kb on - strand, within xerD at 2316.448 kb on - strand, within xerD at 2316.494 kb on + strand, within xerD at 2316.495 kb on - strand, within xerD at 2316.495 kb on - strand, within xerD at 2316.495 kb on - strand, within xerD at 2316.528 kb on + strand, within xerD at 2316.605 kb on + strand, within xerD at 2316.605 kb on + strand, within xerD at 2316.606 kb on - strand, within xerD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,313,769 - BNILDI_11490 0.24 +0.1 2,313,906 + BNILDI_11490 0.36 -0.0 2,314,157 - BNILDI_11490 0.57 -0.1 2,314,238 - BNILDI_11490 0.64 -1.0 2,314,394 + BNILDI_11490 0.77 +0.3 2,315,234 + BNILDI_11495 0.45 +0.1 2,315,297 + BNILDI_11495 0.51 +0.5 2,315,356 - BNILDI_11495 0.56 +0.0 2,315,418 - BNILDI_11495 0.61 -0.7 2,315,420 + BNILDI_11495 0.62 +0.9 2,315,921 - -2.4 2,315,974 - xerD BNILDI_11500 0.12 +0.2 2,315,998 + xerD BNILDI_11500 0.15 -0.2 2,316,103 - xerD BNILDI_11500 0.25 +0.5 2,316,134 - xerD BNILDI_11500 0.28 +0.4 2,316,147 + xerD BNILDI_11500 0.29 +0.7 2,316,188 - xerD BNILDI_11500 0.33 +0.0 2,316,200 - xerD BNILDI_11500 0.34 +0.1 2,316,203 + xerD BNILDI_11500 0.35 +0.1 2,316,283 - xerD BNILDI_11500 0.42 +1.5 2,316,326 + xerD BNILDI_11500 0.47 -0.0 2,316,327 - xerD BNILDI_11500 0.47 +0.3 2,316,372 - xerD BNILDI_11500 0.51 +1.8 2,316,372 - xerD BNILDI_11500 0.51 -0.2 2,316,448 - xerD BNILDI_11500 0.59 -0.1 2,316,448 - xerD BNILDI_11500 0.59 -1.3 2,316,494 + xerD BNILDI_11500 0.63 -0.3 2,316,495 - xerD BNILDI_11500 0.63 -0.8 2,316,495 - xerD BNILDI_11500 0.63 +0.3 2,316,495 - xerD BNILDI_11500 0.63 +0.0 2,316,528 + xerD BNILDI_11500 0.66 +0.3 2,316,605 + xerD BNILDI_11500 0.74 +0.1 2,316,605 + xerD BNILDI_11500 0.74 -0.4 2,316,606 - xerD BNILDI_11500 0.74 +0.1
Or see this region's nucleotide sequence