Strain Fitness in Escherichia coli ECRC62 around BNILDI_09160

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbamA and skp are separated by 121 nucleotidesskp and lpxD are separated by 3 nucleotides BNILDI_09155: bamA - outer membrane protein assembly factor BamA, at 1,835,562 to 1,837,994 bamA BNILDI_09160: skp - molecular chaperone Skp, at 1,838,116 to 1,838,601 skp BNILDI_09165: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,838,605 to 1,839,630 lpxD Position (kb) 1838 1839Strain fitness (log2 ratio) -1 0 1at 1837.992 kb on + strandat 1837.992 kb on + strandat 1838.015 kb on + strandat 1838.050 kb on - strandat 1838.051 kb on + strandat 1838.313 kb on + strand, within skp

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,837,992 + +0.7
1,837,992 + -0.1
1,838,015 + +1.3
1,838,050 - +1.1
1,838,051 + -0.4
1,838,313 + skp BNILDI_09160 0.41 +0.9

Or see this region's nucleotide sequence