Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_08835 and BNILDI_08840 overlap by 14 nucleotides BNILDI_08840 and BNILDI_08845 overlap by 8 nucleotides BNILDI_08845 and BNILDI_08850 are separated by 6 nucleotides BNILDI_08850 and BNILDI_08855 overlap by 4 nucleotides
BNILDI_08835: BNILDI_08835 - toxin Bro, at 1,772,886 to 1,773,569
_08835
BNILDI_08840: BNILDI_08840 - host cell division inhibitor Icd-like protein, at 1,773,556 to 1,774,479
_08840
BNILDI_08845: BNILDI_08845 - hypothetical protein, at 1,774,472 to 1,774,792
_08845
BNILDI_08850: BNILDI_08850 - DUF4222 domain-containing protein, at 1,774,799 to 1,775,092
_08850
BNILDI_08855: BNILDI_08855 - Putative prophage primase, at 1,775,089 to 1,776,204
_08855
Position (kb)
1774
1775 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1773.506 kb on - strand at 1773.537 kb on + strand at 1773.537 kb on + strand at 1773.537 kb on + strand at 1773.537 kb on + strand at 1773.538 kb on - strand at 1773.538 kb on - strand at 1773.602 kb on + strand at 1773.609 kb on + strand at 1773.843 kb on - strand, within BNILDI_08840 at 1773.845 kb on - strand, within BNILDI_08840 at 1773.846 kb on + strand, within BNILDI_08840 at 1773.846 kb on + strand, within BNILDI_08840 at 1773.846 kb on + strand, within BNILDI_08840 at 1773.847 kb on - strand, within BNILDI_08840 at 1773.847 kb on - strand, within BNILDI_08840 at 1773.847 kb on - strand, within BNILDI_08840 at 1773.847 kb on - strand, within BNILDI_08840 at 1774.230 kb on - strand, within BNILDI_08840 at 1774.263 kb on + strand, within BNILDI_08840 at 1774.271 kb on + strand, within BNILDI_08840 at 1774.271 kb on + strand, within BNILDI_08840 at 1774.272 kb on - strand, within BNILDI_08840 at 1774.275 kb on + strand, within BNILDI_08840 at 1774.275 kb on + strand, within BNILDI_08840 at 1774.275 kb on + strand, within BNILDI_08840 at 1774.276 kb on - strand, within BNILDI_08840 at 1774.276 kb on - strand, within BNILDI_08840 at 1774.281 kb on - strand, within BNILDI_08840 at 1774.326 kb on + strand, within BNILDI_08840 at 1774.327 kb on - strand, within BNILDI_08840 at 1774.330 kb on + strand, within BNILDI_08840 at 1774.330 kb on + strand, within BNILDI_08840 at 1774.331 kb on - strand, within BNILDI_08840 at 1774.331 kb on - strand, within BNILDI_08840 at 1774.331 kb on - strand, within BNILDI_08840 at 1774.333 kb on - strand, within BNILDI_08840 at 1774.333 kb on - strand, within BNILDI_08840 at 1774.333 kb on - strand, within BNILDI_08840 at 1774.548 kb on - strand, within BNILDI_08845 at 1774.576 kb on + strand, within BNILDI_08845 at 1774.578 kb on + strand, within BNILDI_08845 at 1774.578 kb on + strand, within BNILDI_08845 at 1774.579 kb on - strand, within BNILDI_08845 at 1774.579 kb on - strand, within BNILDI_08845 at 1774.670 kb on - strand, within BNILDI_08845 at 1774.794 kb on + strand at 1774.808 kb on + strand at 1774.868 kb on + strand, within BNILDI_08850 at 1775.109 kb on - strand at 1775.389 kb on + strand, within BNILDI_08855 at 1775.438 kb on - strand, within BNILDI_08855 at 1775.495 kb on + strand, within BNILDI_08855 at 1775.516 kb on - strand, within BNILDI_08855 at 1775.531 kb on + strand, within BNILDI_08855 at 1775.627 kb on + strand, within BNILDI_08855 at 1775.627 kb on + strand, within BNILDI_08855 at 1775.627 kb on + strand, within BNILDI_08855 at 1775.627 kb on + strand, within BNILDI_08855 at 1775.645 kb on + strand, within BNILDI_08855 at 1775.645 kb on + strand, within BNILDI_08855 at 1775.702 kb on + strand, within BNILDI_08855 at 1775.776 kb on - strand, within BNILDI_08855
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,773,506 - +0.1 1,773,537 + +1.2 1,773,537 + +0.1 1,773,537 + -0.1 1,773,537 + -2.4 1,773,538 - -0.2 1,773,538 - +0.4 1,773,602 + -2.8 1,773,609 + +0.3 1,773,843 - BNILDI_08840 0.31 -0.6 1,773,845 - BNILDI_08840 0.31 +0.8 1,773,846 + BNILDI_08840 0.31 +0.1 1,773,846 + BNILDI_08840 0.31 +0.1 1,773,846 + BNILDI_08840 0.31 -1.8 1,773,847 - BNILDI_08840 0.31 +1.1 1,773,847 - BNILDI_08840 0.31 +0.1 1,773,847 - BNILDI_08840 0.31 -0.0 1,773,847 - BNILDI_08840 0.31 +0.3 1,774,230 - BNILDI_08840 0.73 +0.0 1,774,263 + BNILDI_08840 0.77 -0.2 1,774,271 + BNILDI_08840 0.77 +0.7 1,774,271 + BNILDI_08840 0.77 +0.1 1,774,272 - BNILDI_08840 0.77 +0.2 1,774,275 + BNILDI_08840 0.78 +0.8 1,774,275 + BNILDI_08840 0.78 -1.2 1,774,275 + BNILDI_08840 0.78 +0.2 1,774,276 - BNILDI_08840 0.78 +0.4 1,774,276 - BNILDI_08840 0.78 -0.1 1,774,281 - BNILDI_08840 0.78 -0.7 1,774,326 + BNILDI_08840 0.83 -0.6 1,774,327 - BNILDI_08840 0.83 +1.1 1,774,330 + BNILDI_08840 0.84 +1.5 1,774,330 + BNILDI_08840 0.84 -0.2 1,774,331 - BNILDI_08840 0.84 +1.0 1,774,331 - BNILDI_08840 0.84 -0.1 1,774,331 - BNILDI_08840 0.84 -0.4 1,774,333 - BNILDI_08840 0.84 +1.3 1,774,333 - BNILDI_08840 0.84 -0.4 1,774,333 - BNILDI_08840 0.84 -2.3 1,774,548 - BNILDI_08845 0.24 +1.5 1,774,576 + BNILDI_08845 0.32 -0.4 1,774,578 + BNILDI_08845 0.33 -0.3 1,774,578 + BNILDI_08845 0.33 +0.3 1,774,579 - BNILDI_08845 0.33 -0.6 1,774,579 - BNILDI_08845 0.33 +4.7 1,774,670 - BNILDI_08845 0.62 -0.6 1,774,794 + -0.0 1,774,808 + +0.3 1,774,868 + BNILDI_08850 0.23 +0.1 1,775,109 - -0.1 1,775,389 + BNILDI_08855 0.27 +0.2 1,775,438 - BNILDI_08855 0.31 -0.8 1,775,495 + BNILDI_08855 0.36 -0.7 1,775,516 - BNILDI_08855 0.38 +0.1 1,775,531 + BNILDI_08855 0.40 +0.7 1,775,627 + BNILDI_08855 0.48 +0.3 1,775,627 + BNILDI_08855 0.48 -0.0 1,775,627 + BNILDI_08855 0.48 +0.6 1,775,627 + BNILDI_08855 0.48 +0.1 1,775,645 + BNILDI_08855 0.50 -1.9 1,775,645 + BNILDI_08855 0.50 +0.1 1,775,702 + BNILDI_08855 0.55 -0.4 1,775,776 - BNILDI_08855 0.62 +0.4
Or see this region's nucleotide sequence