Strain Fitness in Escherichia coli ECRC62 around BNILDI_04960

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_04955 and BNILDI_04960 overlap by 4 nucleotidesBNILDI_04960 and BNILDI_04965 are separated by 367 nucleotides BNILDI_04955: BNILDI_04955 - DKNYY family protein, at 980,825 to 982,138 _04955 BNILDI_04960: BNILDI_04960 - DKNYY family protein, at 982,135 to 983,613 _04960 BNILDI_04965: BNILDI_04965 - hypothetical protein, at 983,981 to 984,535 _04965 Position (kb) 982 983 984Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 981.199 kb on - strand, within BNILDI_04955at 981.199 kb on - strand, within BNILDI_04955at 981.212 kb on - strand, within BNILDI_04955at 981.214 kb on - strand, within BNILDI_04955at 981.259 kb on + strand, within BNILDI_04955at 981.266 kb on + strand, within BNILDI_04955at 981.267 kb on - strand, within BNILDI_04955at 981.267 kb on - strand, within BNILDI_04955at 981.267 kb on - strand, within BNILDI_04955at 981.311 kb on - strand, within BNILDI_04955at 981.336 kb on - strand, within BNILDI_04955at 981.336 kb on - strand, within BNILDI_04955at 981.380 kb on + strand, within BNILDI_04955at 981.413 kb on - strand, within BNILDI_04955at 981.498 kb on - strand, within BNILDI_04955at 981.502 kb on - strand, within BNILDI_04955at 981.574 kb on + strand, within BNILDI_04955at 981.574 kb on + strand, within BNILDI_04955at 981.574 kb on + strand, within BNILDI_04955at 981.574 kb on + strand, within BNILDI_04955at 981.596 kb on + strand, within BNILDI_04955at 981.604 kb on + strand, within BNILDI_04955at 981.604 kb on + strand, within BNILDI_04955at 981.677 kb on - strand, within BNILDI_04955at 981.754 kb on - strand, within BNILDI_04955at 981.761 kb on - strand, within BNILDI_04955at 981.762 kb on + strand, within BNILDI_04955at 981.762 kb on + strand, within BNILDI_04955at 981.763 kb on - strand, within BNILDI_04955at 981.763 kb on - strand, within BNILDI_04955at 981.885 kb on + strand, within BNILDI_04955at 981.886 kb on - strand, within BNILDI_04955at 981.905 kb on + strand, within BNILDI_04955at 981.905 kb on + strand, within BNILDI_04955at 981.906 kb on - strand, within BNILDI_04955at 981.920 kb on + strand, within BNILDI_04955at 981.921 kb on - strand, within BNILDI_04955at 981.922 kb on + strand, within BNILDI_04955at 981.923 kb on - strand, within BNILDI_04955at 981.923 kb on - strand, within BNILDI_04955at 981.923 kb on - strand, within BNILDI_04955at 982.033 kb on + strandat 982.033 kb on + strandat 982.033 kb on + strandat 982.033 kb on + strandat 982.034 kb on - strandat 982.034 kb on - strandat 982.034 kb on - strandat 982.034 kb on - strandat 982.050 kb on + strandat 982.050 kb on + strandat 982.051 kb on - strandat 982.051 kb on - strandat 982.124 kb on + strandat 982.124 kb on + strandat 982.125 kb on - strandat 982.125 kb on - strandat 982.167 kb on + strandat 982.168 kb on - strandat 982.219 kb on + strandat 982.220 kb on - strandat 982.319 kb on + strand, within BNILDI_04960at 982.319 kb on + strand, within BNILDI_04960at 982.320 kb on - strand, within BNILDI_04960at 982.320 kb on - strand, within BNILDI_04960at 982.320 kb on - strand, within BNILDI_04960at 982.326 kb on - strand, within BNILDI_04960at 982.343 kb on + strand, within BNILDI_04960at 982.343 kb on + strand, within BNILDI_04960at 982.411 kb on + strand, within BNILDI_04960at 982.411 kb on + strand, within BNILDI_04960at 982.444 kb on + strand, within BNILDI_04960at 982.444 kb on + strand, within BNILDI_04960at 982.445 kb on - strand, within BNILDI_04960at 982.480 kb on - strand, within BNILDI_04960at 982.480 kb on - strand, within BNILDI_04960at 982.483 kb on + strand, within BNILDI_04960at 982.483 kb on + strand, within BNILDI_04960at 982.524 kb on + strand, within BNILDI_04960at 982.525 kb on - strand, within BNILDI_04960at 982.527 kb on + strand, within BNILDI_04960at 982.527 kb on + strand, within BNILDI_04960at 982.593 kb on + strand, within BNILDI_04960at 982.594 kb on - strand, within BNILDI_04960at 982.744 kb on + strand, within BNILDI_04960at 982.745 kb on - strand, within BNILDI_04960at 983.045 kb on + strand, within BNILDI_04960at 983.045 kb on + strand, within BNILDI_04960at 983.045 kb on + strand, within BNILDI_04960at 983.046 kb on - strand, within BNILDI_04960at 983.065 kb on + strand, within BNILDI_04960at 983.069 kb on - strand, within BNILDI_04960at 983.081 kb on - strand, within BNILDI_04960at 983.194 kb on - strand, within BNILDI_04960at 983.288 kb on + strand, within BNILDI_04960at 983.288 kb on + strand, within BNILDI_04960at 983.288 kb on + strand, within BNILDI_04960at 983.312 kb on + strand, within BNILDI_04960at 983.342 kb on + strand, within BNILDI_04960at 983.342 kb on + strand, within BNILDI_04960at 983.411 kb on - strand, within BNILDI_04960at 983.414 kb on - strand, within BNILDI_04960at 983.416 kb on + strand, within BNILDI_04960at 983.493 kb on - strandat 983.495 kb on - strandat 983.523 kb on + strandat 983.523 kb on + strandat 983.523 kb on + strandat 983.524 kb on - strandat 983.526 kb on + strandat 983.527 kb on - strandat 983.566 kb on + strandat 983.614 kb on - strandat 983.662 kb on + strandat 983.663 kb on - strandat 983.676 kb on + strandat 983.677 kb on - strandat 983.682 kb on + strandat 983.716 kb on + strandat 983.716 kb on + strandat 983.717 kb on - strandat 983.717 kb on - strandat 983.717 kb on - strandat 983.719 kb on - strandat 983.742 kb on - strandat 983.778 kb on - strandat 983.779 kb on + strandat 983.779 kb on + strandat 983.783 kb on + strandat 983.783 kb on + strandat 983.784 kb on - strandat 983.791 kb on - strandat 983.878 kb on + strandat 983.879 kb on - strandat 983.879 kb on - strandat 983.906 kb on + strandat 983.906 kb on + strandat 983.907 kb on - strandat 983.907 kb on - strandat 983.926 kb on + strandat 983.927 kb on - strandat 983.942 kb on - strandat 983.942 kb on - strandat 983.944 kb on + strandat 983.945 kb on - strandat 984.042 kb on + strand, within BNILDI_04965at 984.085 kb on + strand, within BNILDI_04965at 984.085 kb on + strand, within BNILDI_04965at 984.118 kb on + strand, within BNILDI_04965at 984.118 kb on + strand, within BNILDI_04965at 984.175 kb on + strand, within BNILDI_04965at 984.175 kb on + strand, within BNILDI_04965at 984.205 kb on + strand, within BNILDI_04965at 984.205 kb on + strand, within BNILDI_04965at 984.205 kb on + strand, within BNILDI_04965at 984.205 kb on + strand, within BNILDI_04965at 984.206 kb on - strand, within BNILDI_04965at 984.207 kb on + strand, within BNILDI_04965at 984.207 kb on + strand, within BNILDI_04965at 984.208 kb on - strand, within BNILDI_04965at 984.215 kb on - strand, within BNILDI_04965at 984.220 kb on + strand, within BNILDI_04965at 984.221 kb on - strand, within BNILDI_04965at 984.223 kb on + strand, within BNILDI_04965at 984.224 kb on - strand, within BNILDI_04965at 984.224 kb on - strand, within BNILDI_04965at 984.224 kb on - strand, within BNILDI_04965at 984.227 kb on + strand, within BNILDI_04965at 984.227 kb on + strand, within BNILDI_04965at 984.228 kb on - strand, within BNILDI_04965at 984.228 kb on - strand, within BNILDI_04965at 984.228 kb on - strand, within BNILDI_04965at 984.260 kb on - strand, within BNILDI_04965at 984.414 kb on - strand, within BNILDI_04965at 984.414 kb on - strand, within BNILDI_04965at 984.415 kb on + strand, within BNILDI_04965at 984.449 kb on + strand, within BNILDI_04965at 984.575 kb on + strandat 984.576 kb on - strandat 984.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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981,199 - BNILDI_04955 0.28 -3.4
981,199 - BNILDI_04955 0.28 -0.1
981,212 - BNILDI_04955 0.29 +0.3
981,214 - BNILDI_04955 0.30 -0.0
981,259 + BNILDI_04955 0.33 +0.1
981,266 + BNILDI_04955 0.34 +0.1
981,267 - BNILDI_04955 0.34 +0.2
981,267 - BNILDI_04955 0.34 +0.5
981,267 - BNILDI_04955 0.34 -0.0
981,311 - BNILDI_04955 0.37 -0.9
981,336 - BNILDI_04955 0.39 +1.3
981,336 - BNILDI_04955 0.39 +0.1
981,380 + BNILDI_04955 0.42 +2.1
981,413 - BNILDI_04955 0.45 -0.3
981,498 - BNILDI_04955 0.51 -1.0
981,502 - BNILDI_04955 0.52 -1.3
981,574 + BNILDI_04955 0.57 -0.2
981,574 + BNILDI_04955 0.57 +0.6
981,574 + BNILDI_04955 0.57 -0.1
981,574 + BNILDI_04955 0.57 +0.0
981,596 + BNILDI_04955 0.59 -0.1
981,604 + BNILDI_04955 0.59 +0.9
981,604 + BNILDI_04955 0.59 -0.2
981,677 - BNILDI_04955 0.65 +0.0
981,754 - BNILDI_04955 0.71 +0.1
981,761 - BNILDI_04955 0.71 +0.1
981,762 + BNILDI_04955 0.71 -0.1
981,762 + BNILDI_04955 0.71 -2.7
981,763 - BNILDI_04955 0.71 +0.3
981,763 - BNILDI_04955 0.71 +0.7
981,885 + BNILDI_04955 0.81 +0.2
981,886 - BNILDI_04955 0.81 -0.6
981,905 + BNILDI_04955 0.82 -2.5
981,905 + BNILDI_04955 0.82 +0.0
981,906 - BNILDI_04955 0.82 +0.7
981,920 + BNILDI_04955 0.83 -0.5
981,921 - BNILDI_04955 0.83 +0.5
981,922 + BNILDI_04955 0.83 +0.7
981,923 - BNILDI_04955 0.84 +0.0
981,923 - BNILDI_04955 0.84 -0.1
981,923 - BNILDI_04955 0.84 +0.9
982,033 + +0.2
982,033 + -0.2
982,033 + +0.0
982,033 + +0.2
982,034 - +1.0
982,034 - +1.2
982,034 - +0.0
982,034 - -0.1
982,050 + +0.0
982,050 + -0.2
982,051 - +0.3
982,051 - +0.0
982,124 + +0.9
982,124 + +0.8
982,125 - +1.3
982,125 - -1.4
982,167 + -0.4
982,168 - +1.1
982,219 + +0.3
982,220 - -0.0
982,319 + BNILDI_04960 0.12 -0.5
982,319 + BNILDI_04960 0.12 +0.2
982,320 - BNILDI_04960 0.13 -0.1
982,320 - BNILDI_04960 0.13 -1.2
982,320 - BNILDI_04960 0.13 -0.0
982,326 - BNILDI_04960 0.13 -1.9
982,343 + BNILDI_04960 0.14 -1.3
982,343 + BNILDI_04960 0.14 -0.2
982,411 + BNILDI_04960 0.19 -2.2
982,411 + BNILDI_04960 0.19 +0.2
982,444 + BNILDI_04960 0.21 +0.1
982,444 + BNILDI_04960 0.21 +1.6
982,445 - BNILDI_04960 0.21 +0.3
982,480 - BNILDI_04960 0.23 +2.0
982,480 - BNILDI_04960 0.23 +0.4
982,483 + BNILDI_04960 0.24 +2.2
982,483 + BNILDI_04960 0.24 -0.2
982,524 + BNILDI_04960 0.26 +0.9
982,525 - BNILDI_04960 0.26 +1.1
982,527 + BNILDI_04960 0.27 +0.9
982,527 + BNILDI_04960 0.27 -0.4
982,593 + BNILDI_04960 0.31 -0.4
982,594 - BNILDI_04960 0.31 -0.2
982,744 + BNILDI_04960 0.41 +0.5
982,745 - BNILDI_04960 0.41 -1.6
983,045 + BNILDI_04960 0.62 +0.0
983,045 + BNILDI_04960 0.62 +1.0
983,045 + BNILDI_04960 0.62 +0.2
983,046 - BNILDI_04960 0.62 +0.2
983,065 + BNILDI_04960 0.63 +1.8
983,069 - BNILDI_04960 0.63 -0.3
983,081 - BNILDI_04960 0.64 +0.4
983,194 - BNILDI_04960 0.72 +0.4
983,288 + BNILDI_04960 0.78 +1.0
983,288 + BNILDI_04960 0.78 -0.5
983,288 + BNILDI_04960 0.78 +0.4
983,312 + BNILDI_04960 0.80 -0.1
983,342 + BNILDI_04960 0.82 +0.1
983,342 + BNILDI_04960 0.82 -2.9
983,411 - BNILDI_04960 0.86 -0.2
983,414 - BNILDI_04960 0.86 +0.8
983,416 + BNILDI_04960 0.87 +1.1
983,493 - -0.6
983,495 - -0.6
983,523 + +0.0
983,523 + +0.5
983,523 + +0.0
983,524 - +2.8
983,526 + -0.1
983,527 - -1.5
983,566 + +0.2
983,614 - +0.4
983,662 + -0.2
983,663 - -0.4
983,676 + +0.5
983,677 - -0.1
983,682 + +0.0
983,716 + +0.1
983,716 + +0.7
983,717 - +0.4
983,717 - -0.6
983,717 - -0.7
983,719 - +1.7
983,742 - -1.8
983,778 - -0.1
983,779 + -1.4
983,779 + +0.0
983,783 + -0.4
983,783 + -0.0
983,784 - -0.1
983,791 - +0.4
983,878 + -0.2
983,879 - +0.3
983,879 - +1.4
983,906 + +0.1
983,906 + -0.7
983,907 - +0.2
983,907 - +0.5
983,926 + -0.0
983,927 - +0.1
983,942 - +0.0
983,942 - +1.3
983,944 + +0.7
983,945 - +0.7
984,042 + BNILDI_04965 0.11 +0.7
984,085 + BNILDI_04965 0.19 +0.7
984,085 + BNILDI_04965 0.19 -1.1
984,118 + BNILDI_04965 0.25 +1.1
984,118 + BNILDI_04965 0.25 +0.4
984,175 + BNILDI_04965 0.35 -1.3
984,175 + BNILDI_04965 0.35 +0.1
984,205 + BNILDI_04965 0.40 -2.1
984,205 + BNILDI_04965 0.40 +0.1
984,205 + BNILDI_04965 0.40 +0.7
984,205 + BNILDI_04965 0.40 -0.1
984,206 - BNILDI_04965 0.41 +0.2
984,207 + BNILDI_04965 0.41 +0.2
984,207 + BNILDI_04965 0.41 -0.1
984,208 - BNILDI_04965 0.41 -0.5
984,215 - BNILDI_04965 0.42 +0.4
984,220 + BNILDI_04965 0.43 -0.7
984,221 - BNILDI_04965 0.43 +0.3
984,223 + BNILDI_04965 0.44 -1.9
984,224 - BNILDI_04965 0.44 +0.2
984,224 - BNILDI_04965 0.44 +0.6
984,224 - BNILDI_04965 0.44 +0.8
984,227 + BNILDI_04965 0.44 +0.1
984,227 + BNILDI_04965 0.44 +2.1
984,228 - BNILDI_04965 0.45 +0.8
984,228 - BNILDI_04965 0.45 +1.2
984,228 - BNILDI_04965 0.45 -0.9
984,260 - BNILDI_04965 0.50 -0.2
984,414 - BNILDI_04965 0.78 -1.2
984,414 - BNILDI_04965 0.78 +0.3
984,415 + BNILDI_04965 0.78 -1.8
984,449 + BNILDI_04965 0.84 -0.4
984,575 + -1.1
984,576 - +0.5
984,576 - -0.1

Or see this region's nucleotide sequence