Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyaA and cyaY are separated by 39 nucleotides cyaY and BNILDI_04955 are separated by 47 nucleotides BNILDI_04955 and BNILDI_04960 overlap by 4 nucleotides
BNILDI_04945: cyaA - class I adenylate cyclase, at 977,871 to 980,417
cyaA
BNILDI_04950: cyaY - iron donor protein CyaY, at 980,457 to 980,777
cyaY
BNILDI_04955: BNILDI_04955 - DKNYY family protein, at 980,825 to 982,138
_04955
BNILDI_04960: BNILDI_04960 - DKNYY family protein, at 982,135 to 983,613
_04960
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 979.954 kb on + strand, within cyaA at 979.954 kb on + strand, within cyaA at 980.136 kb on - strand, within cyaA at 980.138 kb on + strand, within cyaA at 980.139 kb on - strand, within cyaA at 980.142 kb on + strand, within cyaA at 980.143 kb on - strand, within cyaA at 980.256 kb on + strand at 980.295 kb on + strand at 980.295 kb on + strand at 980.296 kb on - strand at 980.398 kb on + strand at 980.441 kb on + strand at 980.783 kb on + strand at 980.811 kb on - strand at 980.888 kb on - strand at 980.888 kb on - strand at 980.915 kb on + strand at 980.915 kb on + strand at 980.916 kb on - strand at 980.916 kb on - strand at 980.916 kb on - strand at 980.962 kb on + strand, within BNILDI_04955 at 980.962 kb on + strand, within BNILDI_04955 at 980.990 kb on - strand, within BNILDI_04955 at 980.990 kb on - strand, within BNILDI_04955 at 981.028 kb on + strand, within BNILDI_04955 at 981.090 kb on + strand, within BNILDI_04955 at 981.090 kb on + strand, within BNILDI_04955 at 981.091 kb on - strand, within BNILDI_04955 at 981.199 kb on - strand, within BNILDI_04955 at 981.199 kb on - strand, within BNILDI_04955 at 981.212 kb on - strand, within BNILDI_04955 at 981.214 kb on - strand, within BNILDI_04955 at 981.259 kb on + strand, within BNILDI_04955 at 981.266 kb on + strand, within BNILDI_04955 at 981.267 kb on - strand, within BNILDI_04955 at 981.267 kb on - strand, within BNILDI_04955 at 981.267 kb on - strand, within BNILDI_04955 at 981.311 kb on - strand, within BNILDI_04955 at 981.336 kb on - strand, within BNILDI_04955 at 981.336 kb on - strand, within BNILDI_04955 at 981.380 kb on + strand, within BNILDI_04955 at 981.413 kb on - strand, within BNILDI_04955 at 981.498 kb on - strand, within BNILDI_04955 at 981.502 kb on - strand, within BNILDI_04955 at 981.574 kb on + strand, within BNILDI_04955 at 981.574 kb on + strand, within BNILDI_04955 at 981.574 kb on + strand, within BNILDI_04955 at 981.574 kb on + strand, within BNILDI_04955 at 981.596 kb on + strand, within BNILDI_04955 at 981.604 kb on + strand, within BNILDI_04955 at 981.604 kb on + strand, within BNILDI_04955 at 981.677 kb on - strand, within BNILDI_04955 at 981.754 kb on - strand, within BNILDI_04955 at 981.761 kb on - strand, within BNILDI_04955 at 981.762 kb on + strand, within BNILDI_04955 at 981.762 kb on + strand, within BNILDI_04955 at 981.763 kb on - strand, within BNILDI_04955 at 981.763 kb on - strand, within BNILDI_04955 at 981.885 kb on + strand, within BNILDI_04955 at 981.886 kb on - strand, within BNILDI_04955 at 981.905 kb on + strand, within BNILDI_04955 at 981.905 kb on + strand, within BNILDI_04955 at 981.906 kb on - strand, within BNILDI_04955 at 981.920 kb on + strand, within BNILDI_04955 at 981.921 kb on - strand, within BNILDI_04955 at 981.922 kb on + strand, within BNILDI_04955 at 981.923 kb on - strand, within BNILDI_04955 at 981.923 kb on - strand, within BNILDI_04955 at 981.923 kb on - strand, within BNILDI_04955 at 982.033 kb on + strand at 982.033 kb on + strand at 982.033 kb on + strand at 982.033 kb on + strand at 982.034 kb on - strand at 982.034 kb on - strand at 982.034 kb on - strand at 982.034 kb on - strand at 982.050 kb on + strand at 982.050 kb on + strand at 982.051 kb on - strand at 982.051 kb on - strand at 982.124 kb on + strand at 982.124 kb on + strand at 982.125 kb on - strand at 982.125 kb on - strand at 982.167 kb on + strand at 982.168 kb on - strand at 982.219 kb on + strand at 982.220 kb on - strand at 982.319 kb on + strand, within BNILDI_04960 at 982.319 kb on + strand, within BNILDI_04960 at 982.320 kb on - strand, within BNILDI_04960 at 982.320 kb on - strand, within BNILDI_04960 at 982.320 kb on - strand, within BNILDI_04960 at 982.326 kb on - strand, within BNILDI_04960 at 982.343 kb on + strand, within BNILDI_04960 at 982.343 kb on + strand, within BNILDI_04960 at 982.411 kb on + strand, within BNILDI_04960 at 982.411 kb on + strand, within BNILDI_04960 at 982.444 kb on + strand, within BNILDI_04960 at 982.444 kb on + strand, within BNILDI_04960 at 982.445 kb on - strand, within BNILDI_04960 at 982.480 kb on - strand, within BNILDI_04960 at 982.480 kb on - strand, within BNILDI_04960 at 982.483 kb on + strand, within BNILDI_04960 at 982.483 kb on + strand, within BNILDI_04960 at 982.524 kb on + strand, within BNILDI_04960 at 982.525 kb on - strand, within BNILDI_04960 at 982.527 kb on + strand, within BNILDI_04960 at 982.527 kb on + strand, within BNILDI_04960 at 982.593 kb on + strand, within BNILDI_04960 at 982.594 kb on - strand, within BNILDI_04960 at 982.744 kb on + strand, within BNILDI_04960 at 982.745 kb on - strand, within BNILDI_04960 at 983.045 kb on + strand, within BNILDI_04960 at 983.045 kb on + strand, within BNILDI_04960 at 983.045 kb on + strand, within BNILDI_04960 at 983.046 kb on - strand, within BNILDI_04960 at 983.065 kb on + strand, within BNILDI_04960 at 983.069 kb on - strand, within BNILDI_04960 at 983.081 kb on - strand, within BNILDI_04960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 979,954 + cyaA BNILDI_04945 0.82 +0.4 979,954 + cyaA BNILDI_04945 0.82 -1.2 980,136 - cyaA BNILDI_04945 0.89 -0.8 980,138 + cyaA BNILDI_04945 0.89 +0.7 980,139 - cyaA BNILDI_04945 0.89 -0.9 980,142 + cyaA BNILDI_04945 0.89 -0.1 980,143 - cyaA BNILDI_04945 0.89 -0.8 980,256 + +1.2 980,295 + -2.3 980,295 + -0.3 980,296 - -0.0 980,398 + -1.0 980,441 + -0.6 980,783 + +0.8 980,811 - +0.4 980,888 - +1.6 980,888 - +0.3 980,915 + +0.5 980,915 + +0.1 980,916 - -0.6 980,916 - -1.4 980,916 - -2.3 980,962 + BNILDI_04955 0.10 +0.0 980,962 + BNILDI_04955 0.10 +0.4 980,990 - BNILDI_04955 0.13 +0.4 980,990 - BNILDI_04955 0.13 +1.4 981,028 + BNILDI_04955 0.15 -0.6 981,090 + BNILDI_04955 0.20 +0.0 981,090 + BNILDI_04955 0.20 +0.7 981,091 - BNILDI_04955 0.20 +0.0 981,199 - BNILDI_04955 0.28 -3.4 981,199 - BNILDI_04955 0.28 -0.1 981,212 - BNILDI_04955 0.29 +0.3 981,214 - BNILDI_04955 0.30 -0.0 981,259 + BNILDI_04955 0.33 +0.1 981,266 + BNILDI_04955 0.34 +0.1 981,267 - BNILDI_04955 0.34 +0.2 981,267 - BNILDI_04955 0.34 +0.5 981,267 - BNILDI_04955 0.34 -0.0 981,311 - BNILDI_04955 0.37 -0.9 981,336 - BNILDI_04955 0.39 +1.3 981,336 - BNILDI_04955 0.39 +0.1 981,380 + BNILDI_04955 0.42 +2.1 981,413 - BNILDI_04955 0.45 -0.3 981,498 - BNILDI_04955 0.51 -1.0 981,502 - BNILDI_04955 0.52 -1.3 981,574 + BNILDI_04955 0.57 -0.2 981,574 + BNILDI_04955 0.57 +0.6 981,574 + BNILDI_04955 0.57 -0.1 981,574 + BNILDI_04955 0.57 +0.0 981,596 + BNILDI_04955 0.59 -0.1 981,604 + BNILDI_04955 0.59 +0.9 981,604 + BNILDI_04955 0.59 -0.2 981,677 - BNILDI_04955 0.65 +0.0 981,754 - BNILDI_04955 0.71 +0.1 981,761 - BNILDI_04955 0.71 +0.1 981,762 + BNILDI_04955 0.71 -0.1 981,762 + BNILDI_04955 0.71 -2.7 981,763 - BNILDI_04955 0.71 +0.3 981,763 - BNILDI_04955 0.71 +0.7 981,885 + BNILDI_04955 0.81 +0.2 981,886 - BNILDI_04955 0.81 -0.6 981,905 + BNILDI_04955 0.82 -2.5 981,905 + BNILDI_04955 0.82 +0.0 981,906 - BNILDI_04955 0.82 +0.7 981,920 + BNILDI_04955 0.83 -0.5 981,921 - BNILDI_04955 0.83 +0.5 981,922 + BNILDI_04955 0.83 +0.7 981,923 - BNILDI_04955 0.84 +0.0 981,923 - BNILDI_04955 0.84 -0.1 981,923 - BNILDI_04955 0.84 +0.9 982,033 + +0.2 982,033 + -0.2 982,033 + +0.0 982,033 + +0.2 982,034 - +1.0 982,034 - +1.2 982,034 - +0.0 982,034 - -0.1 982,050 + +0.0 982,050 + -0.2 982,051 - +0.3 982,051 - +0.0 982,124 + +0.9 982,124 + +0.8 982,125 - +1.3 982,125 - -1.4 982,167 + -0.4 982,168 - +1.1 982,219 + +0.3 982,220 - -0.0 982,319 + BNILDI_04960 0.12 -0.5 982,319 + BNILDI_04960 0.12 +0.2 982,320 - BNILDI_04960 0.13 -0.1 982,320 - BNILDI_04960 0.13 -1.2 982,320 - BNILDI_04960 0.13 -0.0 982,326 - BNILDI_04960 0.13 -1.9 982,343 + BNILDI_04960 0.14 -1.3 982,343 + BNILDI_04960 0.14 -0.2 982,411 + BNILDI_04960 0.19 -2.2 982,411 + BNILDI_04960 0.19 +0.2 982,444 + BNILDI_04960 0.21 +0.1 982,444 + BNILDI_04960 0.21 +1.6 982,445 - BNILDI_04960 0.21 +0.3 982,480 - BNILDI_04960 0.23 +2.0 982,480 - BNILDI_04960 0.23 +0.4 982,483 + BNILDI_04960 0.24 +2.2 982,483 + BNILDI_04960 0.24 -0.2 982,524 + BNILDI_04960 0.26 +0.9 982,525 - BNILDI_04960 0.26 +1.1 982,527 + BNILDI_04960 0.27 +0.9 982,527 + BNILDI_04960 0.27 -0.4 982,593 + BNILDI_04960 0.31 -0.4 982,594 - BNILDI_04960 0.31 -0.2 982,744 + BNILDI_04960 0.41 +0.5 982,745 - BNILDI_04960 0.41 -1.6 983,045 + BNILDI_04960 0.62 +0.0 983,045 + BNILDI_04960 0.62 +1.0 983,045 + BNILDI_04960 0.62 +0.2 983,046 - BNILDI_04960 0.62 +0.2 983,065 + BNILDI_04960 0.63 +1.8 983,069 - BNILDI_04960 0.63 -0.3 983,081 - BNILDI_04960 0.64 +0.4
Or see this region's nucleotide sequence