Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppiC and yifN are separated by 198 nucleotides yifN and rep are separated by 216 nucleotides rep and gppA are separated by 46 nucleotides
BNILDI_04770: ppiC - peptidylprolyl isomerase PpiC, at 946,458 to 946,739
ppiC
BNILDI_04775: yifN - Putative uncharacterized protein YifN, at 946,938 to 947,387
yifN
BNILDI_04780: rep - DNA helicase Rep, at 947,604 to 949,625
rep
BNILDI_04785: gppA - guanosine-5'-triphosphate,3'-diphosphate diphosphatase, at 949,672 to 951,156
gppA
Position (kb) 947
948
949
950 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 946.758 kb on + strand at 946.759 kb on - strand at 946.778 kb on + strand at 946.802 kb on + strand at 946.802 kb on + strand at 946.802 kb on + strand at 946.803 kb on - strand at 946.803 kb on - strand at 946.827 kb on + strand at 946.827 kb on + strand at 946.828 kb on - strand at 946.828 kb on - strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.833 kb on + strand at 946.834 kb on - strand at 946.987 kb on - strand, within yifN at 946.987 kb on - strand, within yifN at 947.022 kb on - strand, within yifN at 947.022 kb on - strand, within yifN at 947.027 kb on - strand, within yifN at 947.036 kb on - strand, within yifN at 947.169 kb on + strand, within yifN at 947.196 kb on + strand, within yifN at 947.210 kb on + strand, within yifN at 947.211 kb on - strand, within yifN at 947.251 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.293 kb on + strand, within yifN at 947.329 kb on + strand, within yifN at 947.367 kb on - strand at 947.378 kb on + strand at 947.406 kb on + strand at 947.406 kb on + strand at 947.446 kb on - strand at 947.453 kb on - strand at 947.458 kb on + strand at 947.458 kb on + strand at 947.504 kb on + strand at 947.534 kb on + strand at 947.534 kb on + strand at 947.535 kb on - strand at 947.597 kb on + strand at 947.597 kb on + strand at 947.598 kb on - strand at 947.603 kb on + strand at 947.604 kb on - strand at 947.751 kb on - strand at 948.115 kb on - strand, within rep at 948.249 kb on + strand, within rep at 948.274 kb on - strand, within rep at 948.627 kb on + strand, within rep at 948.642 kb on - strand, within rep at 949.069 kb on - strand, within rep at 949.205 kb on + strand, within rep at 949.308 kb on + strand, within rep at 949.623 kb on + strand at 949.623 kb on + strand at 949.666 kb on + strand at 949.674 kb on - strand at 949.700 kb on + strand at 949.700 kb on + strand at 949.700 kb on + strand at 949.700 kb on + strand at 949.700 kb on + strand at 949.701 kb on - strand at 949.701 kb on - strand at 949.701 kb on - strand at 949.701 kb on - strand at 949.701 kb on - strand at 949.728 kb on + strand at 949.804 kb on + strand at 949.942 kb on - strand, within gppA at 950.197 kb on - strand, within gppA at 950.197 kb on - strand, within gppA at 950.215 kb on - strand, within gppA at 950.307 kb on + strand, within gppA at 950.307 kb on + strand, within gppA at 950.307 kb on + strand, within gppA at 950.307 kb on + strand, within gppA at 950.308 kb on - strand, within gppA at 950.308 kb on - strand, within gppA at 950.558 kb on - strand, within gppA at 950.578 kb on + strand, within gppA at 950.578 kb on + strand, within gppA at 950.578 kb on + strand, within gppA at 950.578 kb on + strand, within gppA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 946,758 + -0.5 946,759 - +0.0 946,778 + +1.1 946,802 + -2.9 946,802 + +1.2 946,802 + +1.2 946,803 - -0.6 946,803 - -0.2 946,827 + +0.7 946,827 + -0.2 946,828 - +0.3 946,828 - +1.1 946,831 + +0.1 946,831 + -0.1 946,831 + +0.3 946,831 + -0.4 946,831 + -0.5 946,831 + +0.1 946,831 + -0.8 946,831 + -0.5 946,831 + +1.1 946,831 + -1.1 946,831 + -0.3 946,831 + +0.1 946,831 + -0.0 946,831 + -0.8 946,831 + +0.2 946,832 - -2.5 946,832 - +1.6 946,832 - -0.2 946,832 - -1.3 946,832 - +0.4 946,832 - -0.0 946,832 - -0.1 946,832 - +0.2 946,832 - -0.1 946,832 - -2.0 946,832 - +1.7 946,833 + -0.1 946,834 - -2.7 946,987 - yifN BNILDI_04775 0.11 +0.4 946,987 - yifN BNILDI_04775 0.11 +0.8 947,022 - yifN BNILDI_04775 0.19 +0.4 947,022 - yifN BNILDI_04775 0.19 -0.0 947,027 - yifN BNILDI_04775 0.20 -1.2 947,036 - yifN BNILDI_04775 0.22 -1.0 947,169 + yifN BNILDI_04775 0.51 -0.2 947,196 + yifN BNILDI_04775 0.57 -1.5 947,210 + yifN BNILDI_04775 0.60 -0.1 947,211 - yifN BNILDI_04775 0.61 +0.4 947,251 - yifN BNILDI_04775 0.70 -0.3 947,291 - yifN BNILDI_04775 0.78 +0.6 947,291 - yifN BNILDI_04775 0.78 +1.7 947,291 - yifN BNILDI_04775 0.78 +0.2 947,293 + yifN BNILDI_04775 0.79 +0.9 947,329 + yifN BNILDI_04775 0.87 +0.6 947,367 - +0.3 947,378 + +0.7 947,406 + +0.1 947,406 + -1.1 947,446 - -0.4 947,453 - -0.8 947,458 + +0.7 947,458 + +0.4 947,504 + +0.7 947,534 + +1.2 947,534 + +1.8 947,535 - +0.5 947,597 + +0.1 947,597 + +2.6 947,598 - -0.9 947,603 + +0.4 947,604 - -0.8 947,751 - -0.6 948,115 - rep BNILDI_04780 0.25 +0.4 948,249 + rep BNILDI_04780 0.32 -0.3 948,274 - rep BNILDI_04780 0.33 -1.7 948,627 + rep BNILDI_04780 0.51 +1.2 948,642 - rep BNILDI_04780 0.51 -1.9 949,069 - rep BNILDI_04780 0.72 -1.2 949,205 + rep BNILDI_04780 0.79 +0.8 949,308 + rep BNILDI_04780 0.84 +0.6 949,623 + -0.8 949,623 + +0.5 949,666 + +0.3 949,674 - +0.3 949,700 + +0.5 949,700 + +2.2 949,700 + -1.4 949,700 + -0.1 949,700 + -0.1 949,701 - -1.8 949,701 - +0.2 949,701 - -0.3 949,701 - -0.5 949,701 - -1.0 949,728 + -0.2 949,804 + -1.0 949,942 - gppA BNILDI_04785 0.18 -0.5 950,197 - gppA BNILDI_04785 0.35 -0.3 950,197 - gppA BNILDI_04785 0.35 -0.2 950,215 - gppA BNILDI_04785 0.37 +0.6 950,307 + gppA BNILDI_04785 0.43 -2.6 950,307 + gppA BNILDI_04785 0.43 -1.1 950,307 + gppA BNILDI_04785 0.43 +1.7 950,307 + gppA BNILDI_04785 0.43 -0.9 950,308 - gppA BNILDI_04785 0.43 -0.0 950,308 - gppA BNILDI_04785 0.43 +0.1 950,558 - gppA BNILDI_04785 0.60 -2.0 950,578 + gppA BNILDI_04785 0.61 -3.4 950,578 + gppA BNILDI_04785 0.61 -1.0 950,578 + gppA BNILDI_04785 0.61 +0.2 950,578 + gppA BNILDI_04785 0.61 +0.6
Or see this region's nucleotide sequence