Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgoK and dgoR overlap by 4 nucleotides dgoR and yidX are separated by 277 nucleotides yidX and yidA are separated by 45 nucleotides yidA and yidB are separated by 114 nucleotides
BNILDI_04330: dgoK - 2-dehydro-3-deoxygalactonokinase, at 856,074 to 856,952
dgoK
BNILDI_04335: dgoR - D-galactonate utilization transcriptional regulator DgoR, at 856,949 to 857,638
dgoR
BNILDI_04340: yidX - Uncharacterized protein YidX, at 857,916 to 858,572
yidX
BNILDI_04345: yidA - sugar-phosphatase, at 858,618 to 859,430
yidA
BNILDI_04350: yidB - Uncharacterized protein YidB, at 859,545 to 859,943
yidB
Position (kb) 857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.940 kb on - strand at 857.054 kb on - strand, within dgoR at 857.201 kb on - strand, within dgoR at 857.396 kb on + strand, within dgoR at 857.397 kb on - strand, within dgoR at 857.412 kb on + strand, within dgoR at 857.413 kb on - strand, within dgoR at 857.574 kb on + strand at 857.575 kb on - strand at 857.575 kb on - strand at 857.606 kb on - strand at 857.658 kb on + strand at 857.658 kb on + strand at 857.670 kb on + strand at 857.670 kb on + strand at 857.671 kb on - strand at 857.671 kb on - strand at 857.671 kb on - strand at 857.692 kb on - strand at 857.875 kb on + strand at 857.987 kb on + strand, within yidX at 857.988 kb on - strand, within yidX at 858.036 kb on + strand, within yidX at 858.083 kb on + strand, within yidX at 858.084 kb on - strand, within yidX at 858.086 kb on + strand, within yidX at 858.087 kb on - strand, within yidX at 858.135 kb on - strand, within yidX at 858.185 kb on + strand, within yidX at 858.186 kb on - strand, within yidX at 858.229 kb on + strand, within yidX at 858.270 kb on + strand, within yidX at 858.270 kb on + strand, within yidX at 858.271 kb on - strand, within yidX at 858.271 kb on - strand, within yidX at 858.273 kb on + strand, within yidX at 858.273 kb on + strand, within yidX at 858.274 kb on - strand, within yidX at 858.274 kb on - strand, within yidX at 858.277 kb on - strand, within yidX at 858.344 kb on + strand, within yidX at 858.345 kb on - strand, within yidX at 858.345 kb on - strand, within yidX at 858.365 kb on - strand, within yidX at 858.434 kb on + strand, within yidX at 858.453 kb on + strand, within yidX at 858.454 kb on - strand, within yidX at 858.454 kb on - strand, within yidX at 858.496 kb on + strand, within yidX at 858.553 kb on + strand at 858.553 kb on + strand at 858.553 kb on + strand at 858.553 kb on + strand at 858.553 kb on + strand at 858.553 kb on + strand at 858.553 kb on + strand at 858.553 kb on + strand at 858.554 kb on - strand at 858.554 kb on - strand at 858.554 kb on - strand at 858.554 kb on - strand at 858.554 kb on - strand at 858.563 kb on - strand at 858.563 kb on - strand at 858.631 kb on + strand at 858.631 kb on + strand at 858.631 kb on + strand at 858.631 kb on + strand at 858.631 kb on + strand at 858.632 kb on - strand at 858.632 kb on - strand at 858.632 kb on - strand at 858.632 kb on - strand at 858.632 kb on - strand at 858.710 kb on + strand, within yidA at 858.743 kb on - strand, within yidA at 858.804 kb on - strand, within yidA at 858.808 kb on - strand, within yidA at 858.808 kb on - strand, within yidA at 858.874 kb on + strand, within yidA at 858.896 kb on + strand, within yidA at 858.898 kb on + strand, within yidA at 858.898 kb on + strand, within yidA at 858.898 kb on + strand, within yidA at 858.899 kb on - strand, within yidA at 858.933 kb on - strand, within yidA at 859.058 kb on - strand, within yidA at 859.058 kb on - strand, within yidA at 859.061 kb on - strand, within yidA at 859.083 kb on - strand, within yidA at 859.084 kb on + strand, within yidA at 859.162 kb on + strand, within yidA at 859.162 kb on + strand, within yidA at 859.191 kb on - strand, within yidA at 859.210 kb on - strand, within yidA at 859.210 kb on - strand, within yidA at 859.226 kb on - strand, within yidA at 859.226 kb on - strand, within yidA at 859.229 kb on + strand, within yidA at 859.230 kb on - strand, within yidA at 859.257 kb on - strand, within yidA at 859.409 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.444 kb on - strand at 859.448 kb on + strand at 859.448 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 856,940 - -0.4 857,054 - dgoR BNILDI_04335 0.15 +1.1 857,201 - dgoR BNILDI_04335 0.37 -0.5 857,396 + dgoR BNILDI_04335 0.65 -0.5 857,397 - dgoR BNILDI_04335 0.65 -0.2 857,412 + dgoR BNILDI_04335 0.67 -0.1 857,413 - dgoR BNILDI_04335 0.67 +0.0 857,574 + +0.0 857,575 - -0.1 857,575 - +0.2 857,606 - -2.6 857,658 + +0.2 857,658 + -2.3 857,670 + +0.5 857,670 + +0.4 857,671 - +1.0 857,671 - +0.3 857,671 - +0.2 857,692 - +0.1 857,875 + -0.3 857,987 + yidX BNILDI_04340 0.11 -0.1 857,988 - yidX BNILDI_04340 0.11 +1.2 858,036 + yidX BNILDI_04340 0.18 -0.4 858,083 + yidX BNILDI_04340 0.25 -0.8 858,084 - yidX BNILDI_04340 0.26 +0.5 858,086 + yidX BNILDI_04340 0.26 +0.2 858,087 - yidX BNILDI_04340 0.26 +0.0 858,135 - yidX BNILDI_04340 0.33 +0.6 858,185 + yidX BNILDI_04340 0.41 -0.5 858,186 - yidX BNILDI_04340 0.41 -0.3 858,229 + yidX BNILDI_04340 0.48 -0.1 858,270 + yidX BNILDI_04340 0.54 -0.2 858,270 + yidX BNILDI_04340 0.54 +0.2 858,271 - yidX BNILDI_04340 0.54 +0.1 858,271 - yidX BNILDI_04340 0.54 +0.8 858,273 + yidX BNILDI_04340 0.54 -0.7 858,273 + yidX BNILDI_04340 0.54 -1.4 858,274 - yidX BNILDI_04340 0.54 -3.1 858,274 - yidX BNILDI_04340 0.54 +2.5 858,277 - yidX BNILDI_04340 0.55 +0.2 858,344 + yidX BNILDI_04340 0.65 +0.4 858,345 - yidX BNILDI_04340 0.65 -0.5 858,345 - yidX BNILDI_04340 0.65 -0.3 858,365 - yidX BNILDI_04340 0.68 +0.7 858,434 + yidX BNILDI_04340 0.79 -1.3 858,453 + yidX BNILDI_04340 0.82 -1.1 858,454 - yidX BNILDI_04340 0.82 -0.4 858,454 - yidX BNILDI_04340 0.82 -0.1 858,496 + yidX BNILDI_04340 0.88 -0.8 858,553 + -0.6 858,553 + -0.2 858,553 + +0.3 858,553 + -0.2 858,553 + +0.5 858,553 + -0.4 858,553 + +0.8 858,553 + -0.1 858,554 - -0.7 858,554 - -1.4 858,554 - +0.1 858,554 - +0.5 858,554 - +0.2 858,563 - +0.4 858,563 - -3.0 858,631 + +0.2 858,631 + +0.3 858,631 + +0.4 858,631 + -0.1 858,631 + -0.6 858,632 - -0.2 858,632 - -0.6 858,632 - -0.7 858,632 - +0.8 858,632 - -2.0 858,710 + yidA BNILDI_04345 0.11 +1.0 858,743 - yidA BNILDI_04345 0.15 +0.6 858,804 - yidA BNILDI_04345 0.23 -0.7 858,808 - yidA BNILDI_04345 0.23 +0.2 858,808 - yidA BNILDI_04345 0.23 +0.5 858,874 + yidA BNILDI_04345 0.31 +0.1 858,896 + yidA BNILDI_04345 0.34 +0.1 858,898 + yidA BNILDI_04345 0.34 +0.6 858,898 + yidA BNILDI_04345 0.34 +1.1 858,898 + yidA BNILDI_04345 0.34 +0.0 858,899 - yidA BNILDI_04345 0.35 -1.0 858,933 - yidA BNILDI_04345 0.39 -2.2 859,058 - yidA BNILDI_04345 0.54 +1.4 859,058 - yidA BNILDI_04345 0.54 -0.1 859,061 - yidA BNILDI_04345 0.54 +1.1 859,083 - yidA BNILDI_04345 0.57 -0.6 859,084 + yidA BNILDI_04345 0.57 +0.5 859,162 + yidA BNILDI_04345 0.67 -0.1 859,162 + yidA BNILDI_04345 0.67 -0.9 859,191 - yidA BNILDI_04345 0.70 +0.1 859,210 - yidA BNILDI_04345 0.73 -0.2 859,210 - yidA BNILDI_04345 0.73 -0.1 859,226 - yidA BNILDI_04345 0.75 +0.0 859,226 - yidA BNILDI_04345 0.75 -0.1 859,229 + yidA BNILDI_04345 0.75 +0.2 859,230 - yidA BNILDI_04345 0.75 -0.2 859,257 - yidA BNILDI_04345 0.79 -0.5 859,409 + -0.1 859,443 + -0.2 859,443 + -0.3 859,444 - -1.4 859,448 + -0.2 859,448 + -2.1
Or see this region's nucleotide sequence