Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ivbL and tisB are separated by 564 nucleotides tisB and ysdE are separated by 262 nucleotides ysdE and emrD are separated by 81 nucleotides
BNILDI_04205: ivbL - ilvB operon leader peptide IvbL, at 835,226 to 835,324
ivbL
BNILDI_04215: tisB - Small toxic protein TisB, at 835,889 to 835,978
tisB
BNILDI_04220: ysdE - Protein YsdE, at 836,241 to 836,315
ysdE
BNILDI_04225: emrD - multidrug efflux MFS transporter EmrD, at 836,397 to 837,581
emrD
Position (kb) 836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 835.296 kb on - strand, within ivbL at 835.318 kb on + strand at 835.350 kb on - strand at 835.355 kb on + strand at 835.361 kb on + strand at 835.362 kb on - strand at 835.518 kb on - strand at 835.520 kb on + strand at 835.662 kb on - strand at 835.664 kb on - strand at 835.675 kb on - strand at 835.687 kb on - strand at 835.717 kb on + strand at 835.718 kb on - strand at 835.778 kb on + strand at 835.778 kb on + strand at 835.778 kb on + strand at 835.849 kb on + strand at 835.850 kb on - strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.889 kb on - strand at 836.028 kb on + strand at 836.029 kb on - strand at 836.032 kb on + strand at 836.033 kb on - strand at 836.152 kb on + strand at 836.153 kb on - strand at 836.242 kb on + strand at 836.262 kb on + strand, within ysdE at 836.296 kb on + strand, within ysdE at 836.299 kb on - strand, within ysdE at 836.343 kb on + strand at 836.363 kb on + strand at 836.364 kb on - strand at 836.368 kb on + strand at 836.369 kb on - strand at 836.369 kb on - strand at 836.425 kb on + strand at 836.437 kb on + strand at 836.438 kb on - strand at 836.440 kb on + strand at 836.475 kb on + strand at 836.475 kb on + strand at 836.475 kb on + strand at 836.476 kb on - strand at 836.476 kb on - strand at 836.476 kb on - strand at 836.550 kb on + strand, within emrD at 836.562 kb on + strand, within emrD at 836.563 kb on - strand, within emrD at 836.563 kb on - strand, within emrD at 836.563 kb on - strand, within emrD at 836.646 kb on - strand, within emrD at 836.767 kb on + strand, within emrD at 836.768 kb on - strand, within emrD at 836.890 kb on - strand, within emrD at 836.996 kb on + strand, within emrD at 836.996 kb on + strand, within emrD at 836.997 kb on - strand, within emrD at 836.997 kb on - strand, within emrD at 836.997 kb on - strand, within emrD at 837.030 kb on + strand, within emrD at 837.109 kb on + strand, within emrD at 837.123 kb on - strand, within emrD at 837.134 kb on + strand, within emrD at 837.134 kb on + strand, within emrD at 837.143 kb on + strand, within emrD at 837.230 kb on + strand, within emrD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 835,296 - ivbL BNILDI_04205 0.71 +1.4 835,318 + -0.6 835,350 - -0.7 835,355 + -3.6 835,361 + -2.0 835,362 - -0.3 835,518 - -0.3 835,520 + -0.0 835,662 - +0.2 835,664 - +0.2 835,675 - +0.8 835,687 - +0.0 835,717 + -1.9 835,718 - +0.1 835,778 + +0.6 835,778 + -0.3 835,778 + -0.0 835,849 + +0.9 835,850 - -1.5 835,889 - -0.1 835,889 - +1.9 835,889 - -2.0 836,028 + -0.5 836,029 - -1.7 836,032 + -2.9 836,033 - -0.4 836,152 + -0.1 836,153 - -0.1 836,242 + -0.6 836,262 + ysdE BNILDI_04220 0.28 -1.1 836,296 + ysdE BNILDI_04220 0.73 -1.0 836,299 - ysdE BNILDI_04220 0.77 -1.1 836,343 + -1.6 836,363 + +0.1 836,364 - -1.2 836,368 + +0.6 836,369 - +0.0 836,369 - +0.3 836,425 + -1.8 836,437 + -0.3 836,438 - -3.1 836,440 + +0.7 836,475 + +0.6 836,475 + +0.7 836,475 + +0.1 836,476 - +0.2 836,476 - -1.1 836,476 - -3.2 836,550 + emrD BNILDI_04225 0.13 +0.9 836,562 + emrD BNILDI_04225 0.14 +0.5 836,563 - emrD BNILDI_04225 0.14 -0.2 836,563 - emrD BNILDI_04225 0.14 -0.2 836,563 - emrD BNILDI_04225 0.14 -0.2 836,646 - emrD BNILDI_04225 0.21 -1.3 836,767 + emrD BNILDI_04225 0.31 +1.4 836,768 - emrD BNILDI_04225 0.31 -0.0 836,890 - emrD BNILDI_04225 0.42 -1.5 836,996 + emrD BNILDI_04225 0.51 +0.6 836,996 + emrD BNILDI_04225 0.51 -1.7 836,997 - emrD BNILDI_04225 0.51 +0.2 836,997 - emrD BNILDI_04225 0.51 +0.6 836,997 - emrD BNILDI_04225 0.51 +0.0 837,030 + emrD BNILDI_04225 0.53 -0.1 837,109 + emrD BNILDI_04225 0.60 -2.6 837,123 - emrD BNILDI_04225 0.61 -2.2 837,134 + emrD BNILDI_04225 0.62 -0.4 837,134 + emrD BNILDI_04225 0.62 -1.2 837,143 + emrD BNILDI_04225 0.63 -1.5 837,230 + emrD BNILDI_04225 0.70 +2.1
Or see this region's nucleotide sequence