Strain Fitness in Escherichia coli ECRC62 around BNILDI_03265

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_03260 and slp are separated by 623 nucleotidesslp and dctR are separated by 155 nucleotidesdctR and yhiD are separated by 41 nucleotides BNILDI_03260: BNILDI_03260 - YhiS, at 632,145 to 632,990 _03260 BNILDI_03265: slp - outer membrane lipoprotein Slp, at 633,614 to 634,180 slp BNILDI_03270: dctR - HTH-type transcriptional regulator DctR, at 634,336 to 634,866 dctR BNILDI_03275: yhiD - MgtC/SapB family protein, at 634,908 to 635,483 yhiD Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1at 633.563 kb on + strandat 633.671 kb on - strand, within slpat 633.938 kb on - strand, within slpat 634.006 kb on + strand, within slpat 634.007 kb on - strand, within slpat 634.024 kb on + strand, within slpat 634.024 kb on + strand, within slpat 634.025 kb on - strand, within slpat 634.063 kb on + strand, within slpat 634.073 kb on + strand, within slpat 634.074 kb on - strand, within slpat 634.136 kb on + strandat 634.224 kb on + strandat 634.777 kb on + strand, within dctRat 634.794 kb on + strand, within dctRat 634.855 kb on + strandat 634.877 kb on + strandat 634.909 kb on + strandat 634.913 kb on + strandat 634.968 kb on + strand, within yhiDat 635.103 kb on + strand, within yhiDat 635.148 kb on + strand, within yhiD

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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633,563 + -1.1
633,671 - slp BNILDI_03265 0.10 +0.2
633,938 - slp BNILDI_03265 0.57 +0.2
634,006 + slp BNILDI_03265 0.69 +1.0
634,007 - slp BNILDI_03265 0.69 -1.3
634,024 + slp BNILDI_03265 0.72 -0.3
634,024 + slp BNILDI_03265 0.72 -0.5
634,025 - slp BNILDI_03265 0.72 +0.6
634,063 + slp BNILDI_03265 0.79 -0.7
634,073 + slp BNILDI_03265 0.81 -1.0
634,074 - slp BNILDI_03265 0.81 +0.1
634,136 + +0.6
634,224 + -0.1
634,777 + dctR BNILDI_03270 0.83 +0.5
634,794 + dctR BNILDI_03270 0.86 +0.4
634,855 + -0.0
634,877 + -0.1
634,909 + -0.3
634,913 + +0.3
634,968 + yhiD BNILDI_03275 0.10 -1.9
635,103 + yhiD BNILDI_03275 0.34 +0.2
635,148 + yhiD BNILDI_03275 0.42 +1.1

Or see this region's nucleotide sequence