Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nikD and nikE overlap by 4 nucleotides nikE and nikE are separated by 5 nucleotides nikE and mngR are separated by 198 nucleotides mngR and ptsN are separated by 24 nucleotides
BNILDI_03085: nikD - nickel import ATP-binding protein NikD, at 596,891 to 597,655
nikD
BNILDI_03090: nikE - nickel import ATP-binding protein NikE, at 597,652 to 598,458
nikE
BNILDI_03095: nikE - nickel import ATP-binding protein NikE, at 598,464 to 598,865
nikE
BNILDI_03100: mngR - GntR family transcriptional regulator, at 599,064 to 599,810
mngR
BNILDI_03105: ptsN - PTS suar transporter subunit IIA, at 599,835 to 600,308
ptsN
Position (kb) 598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 597.564 kb on + strand, within nikD at 597.592 kb on + strand at 597.592 kb on + strand at 597.659 kb on + strand at 597.659 kb on + strand at 597.659 kb on + strand at 597.659 kb on + strand at 597.660 kb on - strand at 597.663 kb on + strand at 597.664 kb on - strand at 597.834 kb on - strand, within nikE at 597.855 kb on + strand, within nikE at 597.858 kb on + strand, within nikE at 597.859 kb on - strand, within nikE at 597.859 kb on - strand, within nikE at 597.859 kb on - strand, within nikE at 597.933 kb on - strand, within nikE at 598.208 kb on + strand, within nikE at 598.241 kb on + strand, within nikE at 598.241 kb on + strand, within nikE at 598.366 kb on - strand, within nikE at 598.371 kb on - strand, within nikE at 598.401 kb on - strand at 598.416 kb on - strand at 598.416 kb on - strand at 598.539 kb on - strand, within nikE at 598.641 kb on + strand, within nikE at 598.641 kb on + strand, within nikE at 598.642 kb on - strand, within nikE at 598.642 kb on - strand, within nikE at 598.642 kb on - strand, within nikE at 598.731 kb on - strand, within nikE at 598.776 kb on - strand, within nikE at 599.001 kb on + strand at 599.002 kb on - strand at 599.002 kb on - strand at 599.004 kb on + strand at 599.005 kb on - strand at 599.006 kb on + strand at 599.006 kb on + strand at 599.007 kb on - strand at 599.044 kb on + strand at 599.045 kb on - strand at 599.045 kb on - strand at 599.074 kb on + strand at 599.079 kb on - strand at 599.092 kb on + strand at 599.132 kb on + strand at 599.192 kb on + strand, within mngR at 599.258 kb on - strand, within mngR at 599.766 kb on - strand at 599.808 kb on + strand at 599.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 597,564 + nikD BNILDI_03085 0.88 -0.0 597,592 + -0.9 597,592 + -0.5 597,659 + -1.3 597,659 + -0.9 597,659 + +0.3 597,659 + -0.2 597,660 - +0.0 597,663 + +0.1 597,664 - -0.9 597,834 - nikE BNILDI_03090 0.23 -1.2 597,855 + nikE BNILDI_03090 0.25 +0.1 597,858 + nikE BNILDI_03090 0.26 +0.1 597,859 - nikE BNILDI_03090 0.26 +0.1 597,859 - nikE BNILDI_03090 0.26 +0.3 597,859 - nikE BNILDI_03090 0.26 -0.3 597,933 - nikE BNILDI_03090 0.35 +0.5 598,208 + nikE BNILDI_03090 0.69 +0.7 598,241 + nikE BNILDI_03090 0.73 -0.8 598,241 + nikE BNILDI_03090 0.73 -0.2 598,366 - nikE BNILDI_03090 0.88 -2.9 598,371 - nikE BNILDI_03090 0.89 +0.0 598,401 - +0.3 598,416 - -0.2 598,416 - +1.0 598,539 - nikE BNILDI_03095 0.19 +0.7 598,641 + nikE BNILDI_03095 0.44 -0.0 598,641 + nikE BNILDI_03095 0.44 -0.1 598,642 - nikE BNILDI_03095 0.44 -1.5 598,642 - nikE BNILDI_03095 0.44 +0.7 598,642 - nikE BNILDI_03095 0.44 -0.6 598,731 - nikE BNILDI_03095 0.66 -0.2 598,776 - nikE BNILDI_03095 0.78 +0.5 599,001 + +0.9 599,002 - -0.1 599,002 - +0.8 599,004 + -0.2 599,005 - -0.3 599,006 + +0.3 599,006 + -0.3 599,007 - +0.0 599,044 + -0.2 599,045 - -0.6 599,045 - +0.3 599,074 + -0.7 599,079 - -1.6 599,092 + -0.4 599,132 + +1.1 599,192 + mngR BNILDI_03100 0.17 -0.1 599,258 - mngR BNILDI_03100 0.26 +0.2 599,766 - -0.3 599,808 + -0.7 599,845 + +0.1
Or see this region's nucleotide sequence