Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhhQ and dcrB are separated by 72 nucleotides dcrB and yhhS are separated by 3 nucleotides yhhS and yhhT are separated by 89 nucleotides
BNILDI_03045: yhhQ - 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguani ne transporter, at 589,093 to 589,758
yhhQ
BNILDI_03050: dcrB - phage sensitivity protein DcrB, at 589,831 to 590,388
dcrB
BNILDI_03055: yhhS - Uncharacterized MFS-type transporter YhhS, at 590,392 to 591,651
yhhS
BNILDI_03060: yhhT - Putative transport protein YhhT, at 591,741 to 592,790
yhhT
Position (kb) 590
591
592 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 589.447 kb on + strand, within yhhQ at 589.447 kb on + strand, within yhhQ at 589.845 kb on + strand at 589.849 kb on + strand at 589.849 kb on + strand at 589.850 kb on - strand at 589.850 kb on - strand at 589.850 kb on - strand at 589.850 kb on - strand at 589.938 kb on + strand, within dcrB at 589.938 kb on + strand, within dcrB at 589.938 kb on + strand, within dcrB at 589.939 kb on - strand, within dcrB at 589.979 kb on + strand, within dcrB at 590.020 kb on - strand, within dcrB at 590.040 kb on + strand, within dcrB at 590.040 kb on + strand, within dcrB at 590.041 kb on - strand, within dcrB at 590.225 kb on + strand, within dcrB at 590.232 kb on + strand, within dcrB at 590.232 kb on + strand, within dcrB at 590.232 kb on + strand, within dcrB at 590.233 kb on - strand, within dcrB at 590.235 kb on + strand, within dcrB at 590.236 kb on - strand, within dcrB at 590.236 kb on - strand, within dcrB at 590.261 kb on - strand, within dcrB at 590.280 kb on + strand, within dcrB at 590.313 kb on + strand, within dcrB at 590.459 kb on - strand at 590.569 kb on + strand, within yhhS at 590.570 kb on - strand, within yhhS at 590.576 kb on + strand, within yhhS at 590.576 kb on + strand, within yhhS at 590.576 kb on + strand, within yhhS at 590.577 kb on - strand, within yhhS at 590.577 kb on - strand, within yhhS at 590.630 kb on - strand, within yhhS at 590.674 kb on + strand, within yhhS at 590.675 kb on - strand, within yhhS at 590.703 kb on + strand, within yhhS at 590.761 kb on + strand, within yhhS at 590.762 kb on - strand, within yhhS at 590.768 kb on - strand, within yhhS at 590.830 kb on - strand, within yhhS at 590.943 kb on - strand, within yhhS at 591.058 kb on + strand, within yhhS at 591.089 kb on + strand, within yhhS at 591.262 kb on + strand, within yhhS at 591.262 kb on + strand, within yhhS at 591.263 kb on - strand, within yhhS at 591.263 kb on - strand, within yhhS at 591.265 kb on + strand, within yhhS at 591.422 kb on + strand, within yhhS at 591.535 kb on - strand at 591.686 kb on + strand at 591.686 kb on + strand at 591.716 kb on + strand at 591.716 kb on + strand at 591.717 kb on - strand at 591.917 kb on - strand, within yhhT at 591.917 kb on - strand, within yhhT at 591.943 kb on + strand, within yhhT at 591.943 kb on + strand, within yhhT at 592.011 kb on - strand, within yhhT at 592.031 kb on + strand, within yhhT at 592.094 kb on + strand, within yhhT at 592.094 kb on + strand, within yhhT at 592.298 kb on - strand, within yhhT at 592.298 kb on - strand, within yhhT at 592.310 kb on + strand, within yhhT at 592.345 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.444 kb on - strand, within yhhT at 592.511 kb on + strand, within yhhT at 592.511 kb on + strand, within yhhT at 592.515 kb on + strand, within yhhT at 592.523 kb on + strand, within yhhT at 592.547 kb on - strand, within yhhT at 592.576 kb on + strand, within yhhT at 592.624 kb on + strand, within yhhT at 592.625 kb on - strand, within yhhT at 592.640 kb on - strand, within yhhT
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 589,447 + yhhQ BNILDI_03045 0.53 -0.3 589,447 + yhhQ BNILDI_03045 0.53 -0.2 589,845 + -0.2 589,849 + -0.7 589,849 + +0.0 589,850 - -1.6 589,850 - +0.7 589,850 - +0.4 589,850 - -0.3 589,938 + dcrB BNILDI_03050 0.19 +0.1 589,938 + dcrB BNILDI_03050 0.19 -1.4 589,938 + dcrB BNILDI_03050 0.19 +0.3 589,939 - dcrB BNILDI_03050 0.19 -1.7 589,979 + dcrB BNILDI_03050 0.27 -0.9 590,020 - dcrB BNILDI_03050 0.34 +0.5 590,040 + dcrB BNILDI_03050 0.37 +0.2 590,040 + dcrB BNILDI_03050 0.37 -0.9 590,041 - dcrB BNILDI_03050 0.38 -1.3 590,225 + dcrB BNILDI_03050 0.71 +1.8 590,232 + dcrB BNILDI_03050 0.72 +0.7 590,232 + dcrB BNILDI_03050 0.72 +0.4 590,232 + dcrB BNILDI_03050 0.72 -0.7 590,233 - dcrB BNILDI_03050 0.72 -0.2 590,235 + dcrB BNILDI_03050 0.72 +0.1 590,236 - dcrB BNILDI_03050 0.73 -1.0 590,236 - dcrB BNILDI_03050 0.73 -1.7 590,261 - dcrB BNILDI_03050 0.77 +0.5 590,280 + dcrB BNILDI_03050 0.80 -1.9 590,313 + dcrB BNILDI_03050 0.86 +0.1 590,459 - -1.9 590,569 + yhhS BNILDI_03055 0.14 -0.1 590,570 - yhhS BNILDI_03055 0.14 +0.3 590,576 + yhhS BNILDI_03055 0.15 +0.2 590,576 + yhhS BNILDI_03055 0.15 -0.2 590,576 + yhhS BNILDI_03055 0.15 +2.0 590,577 - yhhS BNILDI_03055 0.15 -1.0 590,577 - yhhS BNILDI_03055 0.15 +0.3 590,630 - yhhS BNILDI_03055 0.19 +0.1 590,674 + yhhS BNILDI_03055 0.22 -1.7 590,675 - yhhS BNILDI_03055 0.22 +0.5 590,703 + yhhS BNILDI_03055 0.25 +0.5 590,761 + yhhS BNILDI_03055 0.29 -1.8 590,762 - yhhS BNILDI_03055 0.29 -0.0 590,768 - yhhS BNILDI_03055 0.30 -0.6 590,830 - yhhS BNILDI_03055 0.35 -0.1 590,943 - yhhS BNILDI_03055 0.44 -0.4 591,058 + yhhS BNILDI_03055 0.53 +1.5 591,089 + yhhS BNILDI_03055 0.55 -2.3 591,262 + yhhS BNILDI_03055 0.69 -1.6 591,262 + yhhS BNILDI_03055 0.69 -2.3 591,263 - yhhS BNILDI_03055 0.69 -1.3 591,263 - yhhS BNILDI_03055 0.69 +0.5 591,265 + yhhS BNILDI_03055 0.69 +0.1 591,422 + yhhS BNILDI_03055 0.82 -0.1 591,535 - -1.1 591,686 + +0.4 591,686 + -0.2 591,716 + +0.1 591,716 + -0.1 591,717 - -0.0 591,917 - yhhT BNILDI_03060 0.17 -1.9 591,917 - yhhT BNILDI_03060 0.17 -0.5 591,943 + yhhT BNILDI_03060 0.19 +0.5 591,943 + yhhT BNILDI_03060 0.19 -2.2 592,011 - yhhT BNILDI_03060 0.26 -0.6 592,031 + yhhT BNILDI_03060 0.28 +0.1 592,094 + yhhT BNILDI_03060 0.34 +0.1 592,094 + yhhT BNILDI_03060 0.34 +0.1 592,298 - yhhT BNILDI_03060 0.53 -0.6 592,298 - yhhT BNILDI_03060 0.53 -0.5 592,310 + yhhT BNILDI_03060 0.54 -0.2 592,345 + yhhT BNILDI_03060 0.58 +0.2 592,443 + yhhT BNILDI_03060 0.67 +0.5 592,443 + yhhT BNILDI_03060 0.67 +0.0 592,443 + yhhT BNILDI_03060 0.67 -1.3 592,443 + yhhT BNILDI_03060 0.67 -0.1 592,443 + yhhT BNILDI_03060 0.67 -3.8 592,443 + yhhT BNILDI_03060 0.67 -1.6 592,444 - yhhT BNILDI_03060 0.67 +0.8 592,511 + yhhT BNILDI_03060 0.73 -0.2 592,511 + yhhT BNILDI_03060 0.73 +0.4 592,515 + yhhT BNILDI_03060 0.74 -2.1 592,523 + yhhT BNILDI_03060 0.74 -0.6 592,547 - yhhT BNILDI_03060 0.77 +0.7 592,576 + yhhT BNILDI_03060 0.80 -0.4 592,624 + yhhT BNILDI_03060 0.84 -2.8 592,625 - yhhT BNILDI_03060 0.84 +1.4 592,640 - yhhT BNILDI_03060 0.86 -0.0
Or see this region's nucleotide sequence