Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zntA and BNILDI_03040 are separated by 101 nucleotides BNILDI_03040 and yhhQ are separated by 220 nucleotides yhhQ and dcrB are separated by 72 nucleotides dcrB and yhhS are separated by 3 nucleotides
BNILDI_03035: zntA - Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA, at 586,327 to 588,525
zntA
BNILDI_03040: BNILDI_03040 - Sulfur carrier protein TusA, at 588,627 to 588,872
_03040
BNILDI_03045: yhhQ - 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguani ne transporter, at 589,093 to 589,758
yhhQ
BNILDI_03050: dcrB - phage sensitivity protein DcrB, at 589,831 to 590,388
dcrB
BNILDI_03055: yhhS - Uncharacterized MFS-type transporter YhhS, at 590,392 to 591,651
yhhS
Position (kb) 589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 588.129 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.388 kb on - strand at 588.488 kb on + strand at 588.902 kb on + strand at 588.956 kb on + strand at 588.976 kb on + strand at 588.976 kb on + strand at 588.976 kb on + strand at 588.977 kb on - strand at 588.985 kb on - strand at 589.022 kb on + strand at 589.022 kb on + strand at 589.022 kb on + strand at 589.023 kb on - strand at 589.023 kb on - strand at 589.088 kb on - strand at 589.093 kb on - strand at 589.093 kb on - strand at 589.276 kb on - strand, within yhhQ at 589.306 kb on - strand, within yhhQ at 589.331 kb on + strand, within yhhQ at 589.342 kb on + strand, within yhhQ at 589.343 kb on - strand, within yhhQ at 589.363 kb on + strand, within yhhQ at 589.363 kb on + strand, within yhhQ at 589.364 kb on - strand, within yhhQ at 589.447 kb on + strand, within yhhQ at 589.447 kb on + strand, within yhhQ at 589.845 kb on + strand at 589.849 kb on + strand at 589.849 kb on + strand at 589.850 kb on - strand at 589.850 kb on - strand at 589.850 kb on - strand at 589.850 kb on - strand at 589.938 kb on + strand, within dcrB at 589.938 kb on + strand, within dcrB at 589.938 kb on + strand, within dcrB at 589.939 kb on - strand, within dcrB at 589.979 kb on + strand, within dcrB at 590.020 kb on - strand, within dcrB at 590.040 kb on + strand, within dcrB at 590.040 kb on + strand, within dcrB at 590.041 kb on - strand, within dcrB at 590.225 kb on + strand, within dcrB at 590.232 kb on + strand, within dcrB at 590.232 kb on + strand, within dcrB at 590.232 kb on + strand, within dcrB at 590.233 kb on - strand, within dcrB at 590.235 kb on + strand, within dcrB at 590.236 kb on - strand, within dcrB at 590.236 kb on - strand, within dcrB at 590.261 kb on - strand, within dcrB at 590.280 kb on + strand, within dcrB at 590.313 kb on + strand, within dcrB at 590.459 kb on - strand at 590.569 kb on + strand, within yhhS at 590.570 kb on - strand, within yhhS at 590.576 kb on + strand, within yhhS at 590.576 kb on + strand, within yhhS at 590.576 kb on + strand, within yhhS at 590.577 kb on - strand, within yhhS at 590.577 kb on - strand, within yhhS at 590.630 kb on - strand, within yhhS at 590.674 kb on + strand, within yhhS at 590.675 kb on - strand, within yhhS at 590.703 kb on + strand, within yhhS
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 588,129 + zntA BNILDI_03035 0.82 +1.0 588,140 + zntA BNILDI_03035 0.82 +0.3 588,140 + zntA BNILDI_03035 0.82 -0.9 588,140 + zntA BNILDI_03035 0.82 +1.0 588,388 - +1.8 588,488 + +0.2 588,902 + -1.0 588,956 + -1.0 588,976 + +0.5 588,976 + -0.8 588,976 + +0.3 588,977 - -1.4 588,985 - -0.1 589,022 + -0.0 589,022 + +0.0 589,022 + -0.8 589,023 - -0.7 589,023 - -0.1 589,088 - +0.3 589,093 - +0.5 589,093 - -0.3 589,276 - yhhQ BNILDI_03045 0.27 -0.1 589,306 - yhhQ BNILDI_03045 0.32 -1.8 589,331 + yhhQ BNILDI_03045 0.36 -1.9 589,342 + yhhQ BNILDI_03045 0.37 -3.4 589,343 - yhhQ BNILDI_03045 0.38 +0.2 589,363 + yhhQ BNILDI_03045 0.41 -3.3 589,363 + yhhQ BNILDI_03045 0.41 +0.1 589,364 - yhhQ BNILDI_03045 0.41 -0.1 589,447 + yhhQ BNILDI_03045 0.53 -0.3 589,447 + yhhQ BNILDI_03045 0.53 -0.2 589,845 + -0.2 589,849 + -0.7 589,849 + +0.0 589,850 - -1.6 589,850 - +0.7 589,850 - +0.4 589,850 - -0.3 589,938 + dcrB BNILDI_03050 0.19 +0.1 589,938 + dcrB BNILDI_03050 0.19 -1.4 589,938 + dcrB BNILDI_03050 0.19 +0.3 589,939 - dcrB BNILDI_03050 0.19 -1.7 589,979 + dcrB BNILDI_03050 0.27 -0.9 590,020 - dcrB BNILDI_03050 0.34 +0.5 590,040 + dcrB BNILDI_03050 0.37 +0.2 590,040 + dcrB BNILDI_03050 0.37 -0.9 590,041 - dcrB BNILDI_03050 0.38 -1.3 590,225 + dcrB BNILDI_03050 0.71 +1.8 590,232 + dcrB BNILDI_03050 0.72 +0.7 590,232 + dcrB BNILDI_03050 0.72 +0.4 590,232 + dcrB BNILDI_03050 0.72 -0.7 590,233 - dcrB BNILDI_03050 0.72 -0.2 590,235 + dcrB BNILDI_03050 0.72 +0.1 590,236 - dcrB BNILDI_03050 0.73 -1.0 590,236 - dcrB BNILDI_03050 0.73 -1.7 590,261 - dcrB BNILDI_03050 0.77 +0.5 590,280 + dcrB BNILDI_03050 0.80 -1.9 590,313 + dcrB BNILDI_03050 0.86 +0.1 590,459 - -1.9 590,569 + yhhS BNILDI_03055 0.14 -0.1 590,570 - yhhS BNILDI_03055 0.14 +0.3 590,576 + yhhS BNILDI_03055 0.15 +0.2 590,576 + yhhS BNILDI_03055 0.15 -0.2 590,576 + yhhS BNILDI_03055 0.15 +2.0 590,577 - yhhS BNILDI_03055 0.15 -1.0 590,577 - yhhS BNILDI_03055 0.15 +0.3 590,630 - yhhS BNILDI_03055 0.19 +0.1 590,674 + yhhS BNILDI_03055 0.22 -1.7 590,675 - yhhS BNILDI_03055 0.22 +0.5 590,703 + yhhS BNILDI_03055 0.25 +0.5
Or see this region's nucleotide sequence