Strain Fitness in Escherichia coli ECRC62 around BNILDI_02855

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntasd and yhgN are separated by 192 nucleotidesyhgN and gntU are separated by 56 nucleotides BNILDI_02850: asd - aspartate-semialdehyde dehydrogenase, at 553,675 to 554,778 asd BNILDI_02855: yhgN - NAAT family transporter YhgN, at 554,971 to 555,564 yhgN BNILDI_02860: gntU - gluconate transporter, at 555,621 to 556,961 gntU Position (kb) 554 555 556Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 554.810 kb on + strandat 554.811 kb on - strandat 554.812 kb on + strandat 554.813 kb on - strandat 554.928 kb on + strandat 554.954 kb on - strandat 555.036 kb on + strand, within yhgNat 555.037 kb on - strand, within yhgNat 555.060 kb on + strand, within yhgNat 555.061 kb on - strand, within yhgNat 555.061 kb on - strand, within yhgNat 555.215 kb on + strand, within yhgNat 555.225 kb on + strand, within yhgNat 555.225 kb on + strand, within yhgNat 555.255 kb on + strand, within yhgNat 555.255 kb on + strand, within yhgNat 555.288 kb on + strand, within yhgNat 555.289 kb on - strand, within yhgNat 555.431 kb on + strand, within yhgNat 555.431 kb on + strand, within yhgNat 555.623 kb on - strandat 555.794 kb on + strand, within gntUat 555.830 kb on - strand, within gntUat 555.939 kb on - strand, within gntUat 556.337 kb on + strand, within gntUat 556.338 kb on - strand, within gntUat 556.388 kb on + strand, within gntUat 556.530 kb on + strand, within gntUat 556.531 kb on - strand, within gntU

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
554,810 + -3.6
554,811 - +1.4
554,812 + -3.8
554,813 - +0.5
554,928 + -0.4
554,954 - +3.3
555,036 + yhgN BNILDI_02855 0.11 -0.2
555,037 - yhgN BNILDI_02855 0.11 -0.8
555,060 + yhgN BNILDI_02855 0.15 +0.1
555,061 - yhgN BNILDI_02855 0.15 -0.1
555,061 - yhgN BNILDI_02855 0.15 -0.2
555,215 + yhgN BNILDI_02855 0.41 +0.4
555,225 + yhgN BNILDI_02855 0.43 +1.6
555,225 + yhgN BNILDI_02855 0.43 +0.7
555,255 + yhgN BNILDI_02855 0.48 -0.3
555,255 + yhgN BNILDI_02855 0.48 -0.8
555,288 + yhgN BNILDI_02855 0.53 -1.5
555,289 - yhgN BNILDI_02855 0.54 -0.1
555,431 + yhgN BNILDI_02855 0.77 -0.2
555,431 + yhgN BNILDI_02855 0.77 -1.2
555,623 - +0.2
555,794 + gntU BNILDI_02860 0.13 -1.8
555,830 - gntU BNILDI_02860 0.16 -0.1
555,939 - gntU BNILDI_02860 0.24 +0.7
556,337 + gntU BNILDI_02860 0.53 +1.1
556,338 - gntU BNILDI_02860 0.53 -0.6
556,388 + gntU BNILDI_02860 0.57 +1.8
556,530 + gntU BNILDI_02860 0.68 +0.3
556,531 - gntU BNILDI_02860 0.68 -1.2

Or see this region's nucleotide sequence