Strain Fitness in Escherichia coli ECRC62 around BNILDI_01980
Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | L-Arabinose |
|---|---|---|---|---|---|
| remove | |||||
| 387,003 | + | aaeR | BNILDI_01975 | 0.15 | +0.2 |
| 387,059 | + | aaeR | BNILDI_01975 | 0.21 | +2.0 |
| 387,059 | + | aaeR | BNILDI_01975 | 0.21 | -0.6 |
| 387,063 | - | aaeR | BNILDI_01975 | 0.21 | +1.0 |
| 387,116 | + | aaeR | BNILDI_01975 | 0.27 | +0.1 |
| 387,116 | + | aaeR | BNILDI_01975 | 0.27 | +1.5 |
| 387,117 | - | aaeR | BNILDI_01975 | 0.27 | -0.6 |
| 387,117 | - | aaeR | BNILDI_01975 | 0.27 | -1.4 |
| 387,117 | - | aaeR | BNILDI_01975 | 0.27 | +2.1 |
| 387,117 | - | aaeR | BNILDI_01975 | 0.27 | -0.1 |
| 387,169 | + | aaeR | BNILDI_01975 | 0.32 | -0.8 |
| 387,170 | - | aaeR | BNILDI_01975 | 0.33 | -0.3 |
| 387,218 | + | aaeR | BNILDI_01975 | 0.38 | +0.7 |
| 387,218 | + | aaeR | BNILDI_01975 | 0.38 | -0.1 |
| 387,417 | + | aaeR | BNILDI_01975 | 0.59 | +0.3 |
| 387,417 | + | aaeR | BNILDI_01975 | 0.59 | +0.1 |
| 387,421 | + | aaeR | BNILDI_01975 | 0.60 | -0.1 |
| 387,441 | - | aaeR | BNILDI_01975 | 0.62 | -1.6 |
| 387,526 | + | aaeR | BNILDI_01975 | 0.71 | +0.5 |
| 387,675 | + | aaeR | BNILDI_01975 | 0.87 | +0.2 |
| 387,677 | + | aaeR | BNILDI_01975 | 0.87 | +1.0 |
| 387,677 | + | aaeR | BNILDI_01975 | 0.87 | +0.6 |
| 387,677 | + | aaeR | BNILDI_01975 | 0.87 | +0.3 |
| 387,678 | - | aaeR | BNILDI_01975 | 0.87 | -0.5 |
| 387,678 | - | aaeR | BNILDI_01975 | 0.87 | -0.5 |
| 387,708 | + | +0.7 | |||
| 387,709 | - | +1.5 | |||
| 387,737 | + | -2.1 | |||
| 387,738 | - | -0.0 | |||
| 387,802 | - | +0.6 | |||
| 387,807 | - | +0.8 | |||
| 387,813 | - | -0.3 | |||
| 387,813 | - | +0.0 | |||
| 388,117 | - | tldD | BNILDI_01980 | 0.13 | +0.5 |
| 388,176 | - | tldD | BNILDI_01980 | 0.17 | -1.4 |
| 388,176 | - | tldD | BNILDI_01980 | 0.17 | -0.8 |
| 388,210 | + | tldD | BNILDI_01980 | 0.20 | +0.7 |
| 388,210 | + | tldD | BNILDI_01980 | 0.20 | -1.1 |
| 388,210 | + | tldD | BNILDI_01980 | 0.20 | -0.5 |
| 388,211 | - | tldD | BNILDI_01980 | 0.20 | +1.8 |
| 388,211 | - | tldD | BNILDI_01980 | 0.20 | -1.1 |
| 388,211 | - | tldD | BNILDI_01980 | 0.20 | +0.5 |
| 388,214 | + | tldD | BNILDI_01980 | 0.20 | -1.9 |
| 388,220 | - | tldD | BNILDI_01980 | 0.20 | -2.3 |
| 388,236 | - | tldD | BNILDI_01980 | 0.22 | -1.2 |
| 388,268 | + | tldD | BNILDI_01980 | 0.24 | -0.3 |
| 388,268 | + | tldD | BNILDI_01980 | 0.24 | +0.1 |
| 388,268 | + | tldD | BNILDI_01980 | 0.24 | +0.3 |
| 388,269 | - | tldD | BNILDI_01980 | 0.24 | +0.5 |
| 388,269 | - | tldD | BNILDI_01980 | 0.24 | -0.3 |
| 388,270 | + | tldD | BNILDI_01980 | 0.24 | -0.2 |
| 388,270 | + | tldD | BNILDI_01980 | 0.24 | +0.2 |
| 388,270 | + | tldD | BNILDI_01980 | 0.24 | -0.0 |
| 388,270 | + | tldD | BNILDI_01980 | 0.24 | -0.7 |
| 388,270 | + | tldD | BNILDI_01980 | 0.24 | +0.1 |
| 388,270 | + | tldD | BNILDI_01980 | 0.24 | -0.1 |
| 388,270 | + | tldD | BNILDI_01980 | 0.24 | +1.9 |
| 388,271 | - | tldD | BNILDI_01980 | 0.24 | -0.2 |
| 388,271 | - | tldD | BNILDI_01980 | 0.24 | +1.0 |
| 388,271 | - | tldD | BNILDI_01980 | 0.24 | +0.1 |
| 388,271 | - | tldD | BNILDI_01980 | 0.24 | +0.2 |
| 388,271 | - | tldD | BNILDI_01980 | 0.24 | -0.3 |
| 388,375 | + | tldD | BNILDI_01980 | 0.31 | -0.0 |
| 388,376 | - | tldD | BNILDI_01980 | 0.31 | -0.2 |
| 388,411 | + | tldD | BNILDI_01980 | 0.34 | +0.3 |
| 388,412 | - | tldD | BNILDI_01980 | 0.34 | -0.3 |
| 388,526 | + | tldD | BNILDI_01980 | 0.42 | +0.7 |
| 388,531 | - | tldD | BNILDI_01980 | 0.42 | -0.2 |
| 388,674 | - | tldD | BNILDI_01980 | 0.52 | -1.1 |
| 388,741 | + | tldD | BNILDI_01980 | 0.57 | +0.3 |
| 388,915 | - | tldD | BNILDI_01980 | 0.69 | +1.4 |
| 389,010 | - | tldD | BNILDI_01980 | 0.75 | +0.4 |
| 389,011 | + | tldD | BNILDI_01980 | 0.75 | -0.0 |
| 389,012 | - | tldD | BNILDI_01980 | 0.75 | -0.5 |
| 389,012 | - | tldD | BNILDI_01980 | 0.75 | -0.9 |
| 389,021 | + | tldD | BNILDI_01980 | 0.76 | -0.3 |
| 389,029 | - | tldD | BNILDI_01980 | 0.76 | +1.2 |
| 389,047 | - | tldD | BNILDI_01980 | 0.78 | -0.3 |
| 389,191 | + | tldD | BNILDI_01980 | 0.88 | +1.4 |
| 389,192 | - | tldD | BNILDI_01980 | 0.88 | -0.7 |
| 389,221 | - | tldD | BNILDI_01980 | 0.90 | -1.6 |
| 389,239 | + | +1.1 | |||
| 389,254 | + | +1.1 | |||
| 389,352 | + | +0.8 | |||
| 389,352 | + | -0.7 | |||
| 389,352 | + | +3.1 | |||
| 389,353 | - | +1.8 | |||
| 389,386 | + | -0.9 | |||
| 389,387 | - | -0.3 | |||
| 389,390 | + | -0.1 | |||
| 389,454 | + | +0.7 | |||
| 389,455 | - | +0.1 | |||
| 389,455 | - | -0.5 | |||
| 389,455 | - | -1.7 | |||
| 389,455 | - | +0.3 | |||
| 389,491 | + | +0.2 | |||
| 389,842 | + | +0.1 | |||
| 389,875 | - | -0.8 | |||
| 389,933 | + | yhdP | BNILDI_01985 | 0.11 | -2.8 |
| 389,933 | + | yhdP | BNILDI_01985 | 0.11 | +0.0 |
| 389,934 | - | yhdP | BNILDI_01985 | 0.11 | -0.6 |
| 389,934 | - | yhdP | BNILDI_01985 | 0.11 | -0.1 |
| 390,066 | - | yhdP | BNILDI_01985 | 0.14 | +2.5 |
| 390,083 | - | yhdP | BNILDI_01985 | 0.15 | +0.2 |
| 390,172 | + | yhdP | BNILDI_01985 | 0.17 | -0.5 |
| 390,173 | - | yhdP | BNILDI_01985 | 0.17 | -0.2 |
| 390,191 | - | yhdP | BNILDI_01985 | 0.18 | +1.5 |
| 390,214 | + | yhdP | BNILDI_01985 | 0.18 | +0.7 |
| 390,281 | - | yhdP | BNILDI_01985 | 0.20 | -0.2 |
| 390,334 | + | yhdP | BNILDI_01985 | 0.21 | +0.4 |
| 390,335 | + | yhdP | BNILDI_01985 | 0.21 | -0.1 |
Or see this region's nucleotide sequence