Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nanR and dcuC are separated by 379 nucleotides dcuC and sspB are separated by 42 nucleotides sspB and sspA are separated by 5 nucleotides
BNILDI_01890: nanR - transcriptional regulator NanR, at 371,046 to 371,837
nanR
BNILDI_01895: dcuC - anaerobic C4-dicarboxylate transporter DcuC, at 372,217 to 373,584
dcuC
BNILDI_01900: sspB - ClpXP protease specificity-enhancing factor, at 373,627 to 374,124
sspB
BNILDI_01905: sspA - stringent starvation protein A, at 374,130 to 374,768
sspA
Position (kb) 372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 371.241 kb on - strand, within nanR at 371.367 kb on - strand, within nanR at 371.425 kb on + strand, within nanR at 371.457 kb on + strand, within nanR at 371.458 kb on - strand, within nanR at 371.458 kb on - strand, within nanR at 371.674 kb on - strand, within nanR at 371.857 kb on + strand at 371.894 kb on + strand at 372.012 kb on + strand at 372.231 kb on + strand at 372.231 kb on + strand at 372.232 kb on - strand at 372.249 kb on - strand at 372.280 kb on + strand at 372.356 kb on + strand, within dcuC at 372.401 kb on - strand, within dcuC at 372.403 kb on - strand, within dcuC at 372.482 kb on - strand, within dcuC at 372.556 kb on + strand, within dcuC at 372.557 kb on - strand, within dcuC at 372.557 kb on - strand, within dcuC at 372.558 kb on + strand, within dcuC at 372.558 kb on + strand, within dcuC at 372.559 kb on - strand, within dcuC at 372.561 kb on + strand, within dcuC at 372.561 kb on + strand, within dcuC at 372.562 kb on - strand, within dcuC at 372.577 kb on + strand, within dcuC at 372.577 kb on + strand, within dcuC at 372.577 kb on + strand, within dcuC at 372.577 kb on + strand, within dcuC at 372.606 kb on + strand, within dcuC at 372.607 kb on - strand, within dcuC at 372.609 kb on + strand, within dcuC at 372.630 kb on + strand, within dcuC at 372.630 kb on + strand, within dcuC at 372.631 kb on - strand, within dcuC at 372.650 kb on + strand, within dcuC at 372.650 kb on + strand, within dcuC at 372.650 kb on + strand, within dcuC at 372.651 kb on - strand, within dcuC at 372.651 kb on - strand, within dcuC at 372.651 kb on - strand, within dcuC at 372.790 kb on + strand, within dcuC at 372.791 kb on - strand, within dcuC at 372.791 kb on - strand, within dcuC at 372.944 kb on - strand, within dcuC at 372.947 kb on - strand, within dcuC at 372.971 kb on + strand, within dcuC at 373.095 kb on + strand, within dcuC at 373.096 kb on - strand, within dcuC at 373.096 kb on - strand, within dcuC at 373.191 kb on - strand, within dcuC at 373.284 kb on + strand, within dcuC at 373.359 kb on + strand, within dcuC at 373.360 kb on - strand, within dcuC at 373.360 kb on - strand, within dcuC at 373.382 kb on + strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.400 kb on + strand, within dcuC at 373.400 kb on + strand, within dcuC at 373.582 kb on + strand at 373.590 kb on + strand at 373.591 kb on - strand at 373.626 kb on - strand at 373.642 kb on + strand at 373.738 kb on - strand, within sspB at 373.785 kb on + strand, within sspB at 373.844 kb on + strand, within sspB at 373.845 kb on - strand, within sspB at 373.849 kb on - strand, within sspB at 373.916 kb on - strand, within sspB at 373.991 kb on + strand, within sspB at 373.991 kb on + strand, within sspB at 374.073 kb on - strand, within sspB at 374.073 kb on - strand, within sspB at 374.073 kb on - strand, within sspB at 374.073 kb on - strand, within sspB at 374.073 kb on - strand, within sspB at 374.108 kb on - strand at 374.108 kb on - strand at 374.132 kb on - strand at 374.210 kb on + strand, within sspA at 374.210 kb on + strand, within sspA at 374.211 kb on - strand, within sspA at 374.438 kb on - strand, within sspA at 374.537 kb on - strand, within sspA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 371,241 - nanR BNILDI_01890 0.25 +0.9 371,367 - nanR BNILDI_01890 0.41 -1.1 371,425 + nanR BNILDI_01890 0.48 -0.7 371,457 + nanR BNILDI_01890 0.52 +0.2 371,458 - nanR BNILDI_01890 0.52 +0.4 371,458 - nanR BNILDI_01890 0.52 +0.2 371,674 - nanR BNILDI_01890 0.79 +1.0 371,857 + -0.8 371,894 + +0.5 372,012 + -0.1 372,231 + +0.6 372,231 + -1.0 372,232 - -0.2 372,249 - +0.5 372,280 + -2.4 372,356 + dcuC BNILDI_01895 0.10 +0.4 372,401 - dcuC BNILDI_01895 0.13 -0.6 372,403 - dcuC BNILDI_01895 0.14 -2.3 372,482 - dcuC BNILDI_01895 0.19 +0.1 372,556 + dcuC BNILDI_01895 0.25 -1.1 372,557 - dcuC BNILDI_01895 0.25 -1.3 372,557 - dcuC BNILDI_01895 0.25 +0.0 372,558 + dcuC BNILDI_01895 0.25 -0.4 372,558 + dcuC BNILDI_01895 0.25 -0.2 372,559 - dcuC BNILDI_01895 0.25 +0.2 372,561 + dcuC BNILDI_01895 0.25 -0.3 372,561 + dcuC BNILDI_01895 0.25 -1.9 372,562 - dcuC BNILDI_01895 0.25 -3.0 372,577 + dcuC BNILDI_01895 0.26 -0.5 372,577 + dcuC BNILDI_01895 0.26 -1.1 372,577 + dcuC BNILDI_01895 0.26 +1.4 372,577 + dcuC BNILDI_01895 0.26 +0.3 372,606 + dcuC BNILDI_01895 0.28 +0.4 372,607 - dcuC BNILDI_01895 0.29 -0.4 372,609 + dcuC BNILDI_01895 0.29 +0.6 372,630 + dcuC BNILDI_01895 0.30 +0.0 372,630 + dcuC BNILDI_01895 0.30 -0.0 372,631 - dcuC BNILDI_01895 0.30 +1.5 372,650 + dcuC BNILDI_01895 0.32 -0.7 372,650 + dcuC BNILDI_01895 0.32 -0.3 372,650 + dcuC BNILDI_01895 0.32 -0.2 372,651 - dcuC BNILDI_01895 0.32 +1.0 372,651 - dcuC BNILDI_01895 0.32 -3.1 372,651 - dcuC BNILDI_01895 0.32 +1.6 372,790 + dcuC BNILDI_01895 0.42 +0.9 372,791 - dcuC BNILDI_01895 0.42 -0.1 372,791 - dcuC BNILDI_01895 0.42 -1.4 372,944 - dcuC BNILDI_01895 0.53 -0.7 372,947 - dcuC BNILDI_01895 0.53 -0.4 372,971 + dcuC BNILDI_01895 0.55 -0.2 373,095 + dcuC BNILDI_01895 0.64 +1.2 373,096 - dcuC BNILDI_01895 0.64 -0.2 373,096 - dcuC BNILDI_01895 0.64 -0.5 373,191 - dcuC BNILDI_01895 0.71 +0.5 373,284 + dcuC BNILDI_01895 0.78 -1.3 373,359 + dcuC BNILDI_01895 0.83 +0.1 373,360 - dcuC BNILDI_01895 0.84 +1.2 373,360 - dcuC BNILDI_01895 0.84 -0.8 373,382 + dcuC BNILDI_01895 0.85 -0.1 373,383 - dcuC BNILDI_01895 0.85 -1.1 373,383 - dcuC BNILDI_01895 0.85 -0.3 373,383 - dcuC BNILDI_01895 0.85 +0.1 373,383 - dcuC BNILDI_01895 0.85 -0.5 373,383 - dcuC BNILDI_01895 0.85 +0.4 373,383 - dcuC BNILDI_01895 0.85 +1.1 373,400 + dcuC BNILDI_01895 0.86 -3.4 373,400 + dcuC BNILDI_01895 0.86 -0.1 373,582 + -0.9 373,590 + +0.9 373,591 - -1.5 373,626 - -0.2 373,642 + +0.2 373,738 - sspB BNILDI_01900 0.22 -1.0 373,785 + sspB BNILDI_01900 0.32 +0.4 373,844 + sspB BNILDI_01900 0.44 +0.5 373,845 - sspB BNILDI_01900 0.44 -1.0 373,849 - sspB BNILDI_01900 0.45 +0.0 373,916 - sspB BNILDI_01900 0.58 -0.2 373,991 + sspB BNILDI_01900 0.73 +0.2 373,991 + sspB BNILDI_01900 0.73 +1.1 374,073 - sspB BNILDI_01900 0.90 -0.9 374,073 - sspB BNILDI_01900 0.90 +0.2 374,073 - sspB BNILDI_01900 0.90 -1.2 374,073 - sspB BNILDI_01900 0.90 -1.1 374,073 - sspB BNILDI_01900 0.90 -0.4 374,108 - +0.4 374,108 - +1.8 374,132 - +0.5 374,210 + sspA BNILDI_01905 0.13 -0.1 374,210 + sspA BNILDI_01905 0.13 -1.2 374,211 - sspA BNILDI_01905 0.13 -1.2 374,438 - sspA BNILDI_01905 0.48 -1.8 374,537 - sspA BNILDI_01905 0.64 -0.9
Or see this region's nucleotide sequence