Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uxaC and exuT are separated by 482 nucleotides exuT and cfaD,cfaE are separated by 87 nucleotides
BNILDI_01195: uxaC - glucuronate isomerase, at 236,743 to 238,155
uxaC
BNILDI_01200: exuT - hexuronate transporter ExuT, at 238,638 to 239,936
exuT
BNILDI_01205: cfaD,cfaE - minor pilin and initiator, at 240,024 to 241,112
cfaD,cfaE
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 237.742 kb on - strand, within uxaC at 237.762 kb on + strand, within uxaC at 237.817 kb on - strand, within uxaC at 237.855 kb on - strand, within uxaC at 237.855 kb on - strand, within uxaC at 237.931 kb on - strand, within uxaC at 237.963 kb on + strand, within uxaC at 237.977 kb on + strand, within uxaC at 238.123 kb on + strand at 238.123 kb on + strand at 238.123 kb on + strand at 238.124 kb on - strand at 238.124 kb on - strand at 238.124 kb on - strand at 238.144 kb on - strand at 238.358 kb on - strand at 238.468 kb on + strand at 238.503 kb on + strand at 238.503 kb on + strand at 238.565 kb on - strand at 238.568 kb on + strand at 238.569 kb on - strand at 238.569 kb on - strand at 238.650 kb on - strand at 238.667 kb on + strand at 238.756 kb on + strand at 238.757 kb on - strand at 238.776 kb on + strand, within exuT at 238.782 kb on + strand, within exuT at 238.783 kb on - strand, within exuT at 238.809 kb on + strand, within exuT at 238.810 kb on - strand, within exuT at 238.812 kb on - strand, within exuT at 238.837 kb on - strand, within exuT at 238.840 kb on + strand, within exuT at 238.840 kb on + strand, within exuT at 238.840 kb on + strand, within exuT at 238.841 kb on - strand, within exuT at 238.841 kb on - strand, within exuT at 239.049 kb on + strand, within exuT at 239.059 kb on + strand, within exuT at 239.059 kb on + strand, within exuT at 239.060 kb on - strand, within exuT at 239.101 kb on + strand, within exuT at 239.138 kb on + strand, within exuT at 239.139 kb on - strand, within exuT at 239.139 kb on - strand, within exuT at 239.163 kb on - strand, within exuT at 239.238 kb on + strand, within exuT at 239.239 kb on - strand, within exuT at 239.239 kb on - strand, within exuT at 239.240 kb on + strand, within exuT at 239.241 kb on - strand, within exuT at 239.241 kb on - strand, within exuT at 239.241 kb on - strand, within exuT at 239.243 kb on + strand, within exuT at 239.243 kb on + strand, within exuT at 239.244 kb on - strand, within exuT at 239.244 kb on - strand, within exuT at 239.375 kb on + strand, within exuT at 239.376 kb on - strand, within exuT at 239.490 kb on + strand, within exuT at 239.491 kb on - strand, within exuT at 239.625 kb on - strand, within exuT at 239.625 kb on - strand, within exuT at 239.625 kb on - strand, within exuT at 239.678 kb on + strand, within exuT at 239.833 kb on + strand at 239.845 kb on + strand at 239.858 kb on + strand at 239.859 kb on - strand at 239.912 kb on + strand at 239.913 kb on - strand at 239.913 kb on - strand at 239.913 kb on - strand at 239.913 kb on - strand at 239.913 kb on - strand at 239.934 kb on + strand at 239.946 kb on + strand at 239.947 kb on - strand at 239.947 kb on - strand at 239.954 kb on - strand at 239.990 kb on + strand at 239.990 kb on + strand at 239.994 kb on + strand at 240.076 kb on + strand at 240.076 kb on + strand at 240.076 kb on + strand at 240.076 kb on + strand at 240.076 kb on + strand at 240.076 kb on + strand at 240.077 kb on - strand at 240.077 kb on - strand at 240.077 kb on - strand at 240.092 kb on + strand at 240.111 kb on - strand at 240.323 kb on - strand, within cfaD,cfaE at 240.323 kb on - strand, within cfaD,cfaE at 240.323 kb on - strand, within cfaD,cfaE at 240.334 kb on + strand, within cfaD,cfaE at 240.335 kb on - strand, within cfaD,cfaE at 240.388 kb on + strand, within cfaD,cfaE at 240.454 kb on + strand, within cfaD,cfaE at 240.492 kb on + strand, within cfaD,cfaE at 240.543 kb on - strand, within cfaD,cfaE at 240.560 kb on + strand, within cfaD,cfaE at 240.572 kb on + strand, within cfaD,cfaE at 240.573 kb on - strand, within cfaD,cfaE at 240.698 kb on - strand, within cfaD,cfaE at 240.699 kb on + strand, within cfaD,cfaE at 240.700 kb on - strand, within cfaD,cfaE at 240.700 kb on - strand, within cfaD,cfaE at 240.700 kb on - strand, within cfaD,cfaE at 240.701 kb on + strand, within cfaD,cfaE at 240.701 kb on + strand, within cfaD,cfaE at 240.702 kb on - strand, within cfaD,cfaE at 240.702 kb on - strand, within cfaD,cfaE at 240.702 kb on - strand, within cfaD,cfaE at 240.703 kb on + strand, within cfaD,cfaE at 240.703 kb on + strand, within cfaD,cfaE at 240.703 kb on + strand, within cfaD,cfaE at 240.703 kb on + strand, within cfaD,cfaE at 240.704 kb on - strand, within cfaD,cfaE at 240.704 kb on - strand, within cfaD,cfaE at 240.704 kb on - strand, within cfaD,cfaE at 240.726 kb on - strand, within cfaD,cfaE at 240.738 kb on - strand, within cfaD,cfaE at 240.740 kb on + strand, within cfaD,cfaE at 240.804 kb on - strand, within cfaD,cfaE at 240.804 kb on - strand, within cfaD,cfaE at 240.807 kb on + strand, within cfaD,cfaE at 240.808 kb on - strand, within cfaD,cfaE at 240.874 kb on + strand, within cfaD,cfaE at 240.893 kb on + strand, within cfaD,cfaE at 240.893 kb on + strand, within cfaD,cfaE at 240.894 kb on - strand, within cfaD,cfaE at 240.903 kb on - strand, within cfaD,cfaE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 237,742 - uxaC BNILDI_01195 0.71 +0.4 237,762 + uxaC BNILDI_01195 0.72 -0.8 237,817 - uxaC BNILDI_01195 0.76 -0.0 237,855 - uxaC BNILDI_01195 0.79 +0.4 237,855 - uxaC BNILDI_01195 0.79 -0.5 237,931 - uxaC BNILDI_01195 0.84 +1.0 237,963 + uxaC BNILDI_01195 0.86 -0.4 237,977 + uxaC BNILDI_01195 0.87 -0.0 238,123 + -1.2 238,123 + -0.3 238,123 + +0.2 238,124 - +0.2 238,124 - -0.4 238,124 - +0.1 238,144 - +0.7 238,358 - -0.3 238,468 + -0.2 238,503 + -0.4 238,503 + +0.0 238,565 - +0.0 238,568 + +1.7 238,569 - -0.3 238,569 - +1.2 238,650 - -0.4 238,667 + +0.1 238,756 + -0.5 238,757 - -0.3 238,776 + exuT BNILDI_01200 0.11 +1.3 238,782 + exuT BNILDI_01200 0.11 +0.5 238,783 - exuT BNILDI_01200 0.11 +0.1 238,809 + exuT BNILDI_01200 0.13 -0.1 238,810 - exuT BNILDI_01200 0.13 +0.7 238,812 - exuT BNILDI_01200 0.13 -0.1 238,837 - exuT BNILDI_01200 0.15 +0.1 238,840 + exuT BNILDI_01200 0.16 +0.1 238,840 + exuT BNILDI_01200 0.16 +0.7 238,840 + exuT BNILDI_01200 0.16 +0.1 238,841 - exuT BNILDI_01200 0.16 -0.2 238,841 - exuT BNILDI_01200 0.16 -0.4 239,049 + exuT BNILDI_01200 0.32 -1.8 239,059 + exuT BNILDI_01200 0.32 +0.6 239,059 + exuT BNILDI_01200 0.32 +2.1 239,060 - exuT BNILDI_01200 0.32 -0.0 239,101 + exuT BNILDI_01200 0.36 +0.1 239,138 + exuT BNILDI_01200 0.38 -1.3 239,139 - exuT BNILDI_01200 0.39 +0.3 239,139 - exuT BNILDI_01200 0.39 +0.3 239,163 - exuT BNILDI_01200 0.40 -1.7 239,238 + exuT BNILDI_01200 0.46 +2.3 239,239 - exuT BNILDI_01200 0.46 -1.5 239,239 - exuT BNILDI_01200 0.46 +0.0 239,240 + exuT BNILDI_01200 0.46 -0.5 239,241 - exuT BNILDI_01200 0.46 -1.5 239,241 - exuT BNILDI_01200 0.46 -0.2 239,241 - exuT BNILDI_01200 0.46 +0.2 239,243 + exuT BNILDI_01200 0.47 -0.7 239,243 + exuT BNILDI_01200 0.47 +3.7 239,244 - exuT BNILDI_01200 0.47 +0.8 239,244 - exuT BNILDI_01200 0.47 -0.3 239,375 + exuT BNILDI_01200 0.57 +0.8 239,376 - exuT BNILDI_01200 0.57 +0.4 239,490 + exuT BNILDI_01200 0.66 -2.1 239,491 - exuT BNILDI_01200 0.66 +0.2 239,625 - exuT BNILDI_01200 0.76 +0.5 239,625 - exuT BNILDI_01200 0.76 +0.1 239,625 - exuT BNILDI_01200 0.76 +0.2 239,678 + exuT BNILDI_01200 0.80 -0.6 239,833 + +0.0 239,845 + -0.1 239,858 + +1.3 239,859 - -0.5 239,912 + +0.8 239,913 - +1.2 239,913 - -0.0 239,913 - +1.3 239,913 - -0.2 239,913 - -0.4 239,934 + -0.5 239,946 + -2.9 239,947 - +1.1 239,947 - +1.1 239,954 - +0.8 239,990 + +0.4 239,990 + +0.1 239,994 + -0.0 240,076 + -0.3 240,076 + -0.1 240,076 + +1.1 240,076 + -0.2 240,076 + +0.2 240,076 + -0.3 240,077 - +0.6 240,077 - -2.5 240,077 - +0.2 240,092 + +0.6 240,111 - -0.3 240,323 - cfaD,cfaE BNILDI_01205 0.27 +0.8 240,323 - cfaD,cfaE BNILDI_01205 0.27 +0.1 240,323 - cfaD,cfaE BNILDI_01205 0.27 -0.3 240,334 + cfaD,cfaE BNILDI_01205 0.28 -0.5 240,335 - cfaD,cfaE BNILDI_01205 0.29 +1.3 240,388 + cfaD,cfaE BNILDI_01205 0.33 +0.6 240,454 + cfaD,cfaE BNILDI_01205 0.39 -0.3 240,492 + cfaD,cfaE BNILDI_01205 0.43 -0.7 240,543 - cfaD,cfaE BNILDI_01205 0.48 -0.4 240,560 + cfaD,cfaE BNILDI_01205 0.49 +0.4 240,572 + cfaD,cfaE BNILDI_01205 0.50 +0.9 240,573 - cfaD,cfaE BNILDI_01205 0.50 +0.0 240,698 - cfaD,cfaE BNILDI_01205 0.62 -0.2 240,699 + cfaD,cfaE BNILDI_01205 0.62 -0.6 240,700 - cfaD,cfaE BNILDI_01205 0.62 +0.1 240,700 - cfaD,cfaE BNILDI_01205 0.62 -0.7 240,700 - cfaD,cfaE BNILDI_01205 0.62 +0.2 240,701 + cfaD,cfaE BNILDI_01205 0.62 -0.4 240,701 + cfaD,cfaE BNILDI_01205 0.62 -0.4 240,702 - cfaD,cfaE BNILDI_01205 0.62 +0.4 240,702 - cfaD,cfaE BNILDI_01205 0.62 +0.5 240,702 - cfaD,cfaE BNILDI_01205 0.62 -2.1 240,703 + cfaD,cfaE BNILDI_01205 0.62 +0.6 240,703 + cfaD,cfaE BNILDI_01205 0.62 +0.4 240,703 + cfaD,cfaE BNILDI_01205 0.62 +0.1 240,703 + cfaD,cfaE BNILDI_01205 0.62 -0.3 240,704 - cfaD,cfaE BNILDI_01205 0.62 +0.3 240,704 - cfaD,cfaE BNILDI_01205 0.62 +0.2 240,704 - cfaD,cfaE BNILDI_01205 0.62 -1.3 240,726 - cfaD,cfaE BNILDI_01205 0.64 +0.2 240,738 - cfaD,cfaE BNILDI_01205 0.66 -0.2 240,740 + cfaD,cfaE BNILDI_01205 0.66 -0.5 240,804 - cfaD,cfaE BNILDI_01205 0.72 +0.6 240,804 - cfaD,cfaE BNILDI_01205 0.72 +0.3 240,807 + cfaD,cfaE BNILDI_01205 0.72 -0.4 240,808 - cfaD,cfaE BNILDI_01205 0.72 -1.5 240,874 + cfaD,cfaE BNILDI_01205 0.78 -0.4 240,893 + cfaD,cfaE BNILDI_01205 0.80 -0.1 240,893 + cfaD,cfaE BNILDI_01205 0.80 +0.1 240,894 - cfaD,cfaE BNILDI_01205 0.80 -2.7 240,903 - cfaD,cfaE BNILDI_01205 0.81 +0.9
Or see this region's nucleotide sequence