Strain Fitness in Escherichia coli ECRC62 around BNILDI_01115

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
215,287	+	ebgR	BNILDI_01110	0.19	+1.8
215,288	-	ebgR	BNILDI_01110	0.20	-1.0
215,300	+	ebgR	BNILDI_01110	0.21	-0.7
215,300	+	ebgR	BNILDI_01110	0.21	-0.0
215,301	-	ebgR	BNILDI_01110	0.21	+0.7
215,307	-	ebgR	BNILDI_01110	0.21	+1.2
215,337	-	ebgR	BNILDI_01110	0.24	+0.4
215,451	+	ebgR	BNILDI_01110	0.36	+0.5
215,509	+	ebgR	BNILDI_01110	0.42	+0.1
215,547	-	ebgR	BNILDI_01110	0.46	+0.7
215,601	-	ebgR	BNILDI_01110	0.51	+1.1
215,632	+	ebgR	BNILDI_01110	0.54	+0.2
215,841	+	ebgR	BNILDI_01110	0.76	+0.5
216,209	-				+0.1
216,217	+				+0.9
216,218	-				+0.0
216,321	-				+0.4
216,332	+				+0.4
216,462	+				-0.1
216,481	+				-0.9
216,532	+				-0.3
216,533	-				-1.1
216,675	-	ebgA	BNILDI_01115	0.13	-0.2
216,686	+	ebgA	BNILDI_01115	0.14	+0.3
216,686	+	ebgA	BNILDI_01115	0.14	-0.7
216,686	+	ebgA	BNILDI_01115	0.14	-0.3
216,686	+	ebgA	BNILDI_01115	0.14	-1.5
216,687	-	ebgA	BNILDI_01115	0.14	-0.9
216,701	+	ebgA	BNILDI_01115	0.14	-0.2
216,811	+	ebgA	BNILDI_01115	0.18	-0.3
216,811	+	ebgA	BNILDI_01115	0.18	-1.2
216,812	-	ebgA	BNILDI_01115	0.18	+0.8
216,812	-	ebgA	BNILDI_01115	0.18	-0.2
216,816	-	ebgA	BNILDI_01115	0.18	-0.0
216,832	+	ebgA	BNILDI_01115	0.18	-0.5
216,832	+	ebgA	BNILDI_01115	0.18	+0.6
216,832	+	ebgA	BNILDI_01115	0.18	+0.3
216,833	-	ebgA	BNILDI_01115	0.18	-0.1
216,896	-	ebgA	BNILDI_01115	0.20	+0.1
216,932	+	ebgA	BNILDI_01115	0.22	+0.8
216,933	-	ebgA	BNILDI_01115	0.22	-0.5
216,933	-	ebgA	BNILDI_01115	0.22	-0.4
217,008	-	ebgA	BNILDI_01115	0.24	-2.5
217,008	-	ebgA	BNILDI_01115	0.24	+0.5
217,010	-	ebgA	BNILDI_01115	0.24	-0.5
217,096	+	ebgA	BNILDI_01115	0.27	-3.2
217,136	+	ebgA	BNILDI_01115	0.28	+0.5
217,219	+	ebgA	BNILDI_01115	0.31	-0.4
217,260	-	ebgA	BNILDI_01115	0.32	-0.3
217,367	-	ebgA	BNILDI_01115	0.36	+0.7
217,367	-	ebgA	BNILDI_01115	0.36	-2.1
217,367	-	ebgA	BNILDI_01115	0.36	-0.2
217,480	+	ebgA	BNILDI_01115	0.39	+0.9
217,641	-	ebgA	BNILDI_01115	0.45	+0.6
217,641	-	ebgA	BNILDI_01115	0.45	-0.5
217,800	-	ebgA	BNILDI_01115	0.50	+0.7
217,800	-	ebgA	BNILDI_01115	0.50	-0.4
217,856	+	ebgA	BNILDI_01115	0.52	+1.8
217,858	+	ebgA	BNILDI_01115	0.52	-1.5
217,871	-	ebgA	BNILDI_01115	0.52	+0.9
217,982	+	ebgA	BNILDI_01115	0.56	+0.2
217,982	+	ebgA	BNILDI_01115	0.56	+0.7
217,982	+	ebgA	BNILDI_01115	0.56	+0.2
217,982	+	ebgA	BNILDI_01115	0.56	+0.8
217,983	-	ebgA	BNILDI_01115	0.56	-0.0
217,983	-	ebgA	BNILDI_01115	0.56	-2.0
217,984	+	ebgA	BNILDI_01115	0.56	-0.2
218,009	+	ebgA	BNILDI_01115	0.56	-1.0
218,116	+	ebgA	BNILDI_01115	0.60	-0.8
218,116	+	ebgA	BNILDI_01115	0.60	+0.8
218,145	-	ebgA	BNILDI_01115	0.61	+0.3
218,288	-	ebgA	BNILDI_01115	0.65	+0.2
218,336	-	ebgA	BNILDI_01115	0.67	-0.4
218,346	-	ebgA	BNILDI_01115	0.67	-0.3
218,398	+	ebgA	BNILDI_01115	0.69	-2.3
218,399	-	ebgA	BNILDI_01115	0.69	-1.7
218,585	+	ebgA	BNILDI_01115	0.75	+1.1
218,732	+	ebgA	BNILDI_01115	0.80	+2.4
218,732	+	ebgA	BNILDI_01115	0.80	+0.3
218,960	+	ebgA	BNILDI_01115	0.87	-0.3
218,960	+	ebgA	BNILDI_01115	0.87	-0.5
218,961	-	ebgA	BNILDI_01115	0.87	-0.3
219,081	-				+0.1
219,115	+				-0.1
219,299	+				-0.3
219,347	-				-0.8
219,372	-				-0.2
219,544	+	ebgC	BNILDI_01120	0.43	-0.1
219,559	+	ebgC	BNILDI_01120	0.46	+0.9
219,563	-	ebgC	BNILDI_01120	0.47	-0.1
219,589	+	ebgC	BNILDI_01120	0.53	+0.2
219,615	-	ebgC	BNILDI_01120	0.58	+0.3
219,842	+				-0.1
219,863	+				+1.3
219,882	-				-0.3
220,121	+	ygjI	BNILDI_01125	0.18	-0.3
220,122	-	ygjI	BNILDI_01125	0.18	-0.0
220,124	+	ygjI	BNILDI_01125	0.18	-0.3
220,221	+	ygjI	BNILDI_01125	0.25	-2.4
220,221	+	ygjI	BNILDI_01125	0.25	-1.6
220,226	+	ygjI	BNILDI_01125	0.25	-0.2
220,227	-	ygjI	BNILDI_01125	0.25	-0.4
220,319	+	ygjI	BNILDI_01125	0.32	+1.0
220,319	+	ygjI	BNILDI_01125	0.32	+0.1