Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hybB and hybA overlap by 11 nucleotides hybA and hybO are separated by 2 nucleotides hybO and yghW are separated by 188 nucleotides yghW and dLH are separated by 118 nucleotides
BNILDI_00725: hybB - Ni/Fe-hydrogenase cytochrome b subunit, at 140,214 to 141,392
hybB
BNILDI_00730: hybA - hydrogenase 2 operon protein HybA, at 141,382 to 142,368
hybA
BNILDI_00735: hybO - hydrogenase 2 small subunit, at 142,371 to 143,489
hybO
BNILDI_00740: yghW - Uncharacterized protein YghW, at 143,678 to 143,965
yghW
BNILDI_00745: dLH - dienelactone hydrolase, at 144,084 to 144,971
dLH
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 141.487 kb on - strand, within hybA at 141.487 kb on - strand, within hybA at 141.488 kb on + strand, within hybA at 141.489 kb on - strand, within hybA at 141.489 kb on - strand, within hybA at 141.632 kb on + strand, within hybA at 141.632 kb on + strand, within hybA at 141.632 kb on + strand, within hybA at 141.633 kb on - strand, within hybA at 141.654 kb on - strand, within hybA at 141.693 kb on - strand, within hybA at 141.788 kb on - strand, within hybA at 141.884 kb on + strand, within hybA at 141.899 kb on + strand, within hybA at 142.032 kb on + strand, within hybA at 142.032 kb on + strand, within hybA at 142.033 kb on - strand, within hybA at 142.033 kb on - strand, within hybA at 142.033 kb on - strand, within hybA at 142.049 kb on + strand, within hybA at 142.049 kb on + strand, within hybA at 142.124 kb on + strand, within hybA at 142.125 kb on - strand, within hybA at 142.125 kb on - strand, within hybA at 142.191 kb on + strand, within hybA at 142.244 kb on + strand, within hybA at 142.244 kb on + strand, within hybA at 142.350 kb on + strand at 142.714 kb on + strand, within hybO at 142.819 kb on + strand, within hybO at 142.820 kb on - strand, within hybO at 143.181 kb on - strand, within hybO at 143.337 kb on - strand, within hybO at 143.357 kb on + strand, within hybO at 143.394 kb on - strand at 143.398 kb on - strand at 143.493 kb on + strand at 143.498 kb on - strand at 143.522 kb on + strand at 143.569 kb on - strand at 143.580 kb on - strand at 143.583 kb on - strand at 143.639 kb on + strand at 143.639 kb on + strand at 143.644 kb on + strand at 143.644 kb on + strand at 143.653 kb on - strand at 143.669 kb on + strand at 143.669 kb on + strand at 143.835 kb on + strand, within yghW at 143.835 kb on + strand, within yghW at 143.850 kb on + strand, within yghW at 143.851 kb on - strand, within yghW at 143.855 kb on + strand, within yghW at 143.858 kb on + strand, within yghW at 143.873 kb on - strand, within yghW at 143.873 kb on - strand, within yghW at 143.874 kb on + strand, within yghW at 143.899 kb on + strand, within yghW at 143.940 kb on - strand at 143.948 kb on - strand at 144.037 kb on - strand at 144.055 kb on - strand at 144.098 kb on + strand at 144.098 kb on + strand at 144.098 kb on + strand at 144.196 kb on + strand, within dLH at 144.201 kb on - strand, within dLH at 144.201 kb on - strand, within dLH at 144.201 kb on - strand, within dLH at 144.202 kb on + strand, within dLH at 144.202 kb on + strand, within dLH at 144.203 kb on - strand, within dLH at 144.212 kb on - strand, within dLH at 144.218 kb on + strand, within dLH at 144.221 kb on + strand, within dLH at 144.244 kb on + strand, within dLH at 144.294 kb on + strand, within dLH at 144.298 kb on - strand, within dLH at 144.428 kb on + strand, within dLH at 144.465 kb on - strand, within dLH
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 141,487 - hybA BNILDI_00730 0.11 -0.2 141,487 - hybA BNILDI_00730 0.11 -0.4 141,488 + hybA BNILDI_00730 0.11 -0.8 141,489 - hybA BNILDI_00730 0.11 +0.3 141,489 - hybA BNILDI_00730 0.11 +0.8 141,632 + hybA BNILDI_00730 0.25 -0.0 141,632 + hybA BNILDI_00730 0.25 -3.1 141,632 + hybA BNILDI_00730 0.25 -0.1 141,633 - hybA BNILDI_00730 0.25 -0.8 141,654 - hybA BNILDI_00730 0.28 -2.6 141,693 - hybA BNILDI_00730 0.32 +0.5 141,788 - hybA BNILDI_00730 0.41 +0.4 141,884 + hybA BNILDI_00730 0.51 +1.9 141,899 + hybA BNILDI_00730 0.52 -0.4 142,032 + hybA BNILDI_00730 0.66 -0.6 142,032 + hybA BNILDI_00730 0.66 +0.2 142,033 - hybA BNILDI_00730 0.66 +0.1 142,033 - hybA BNILDI_00730 0.66 +3.5 142,033 - hybA BNILDI_00730 0.66 +0.6 142,049 + hybA BNILDI_00730 0.68 +0.1 142,049 + hybA BNILDI_00730 0.68 -1.5 142,124 + hybA BNILDI_00730 0.75 +0.4 142,125 - hybA BNILDI_00730 0.75 +0.7 142,125 - hybA BNILDI_00730 0.75 -0.6 142,191 + hybA BNILDI_00730 0.82 -2.7 142,244 + hybA BNILDI_00730 0.87 +1.7 142,244 + hybA BNILDI_00730 0.87 -0.1 142,350 + +0.7 142,714 + hybO BNILDI_00735 0.31 -0.5 142,819 + hybO BNILDI_00735 0.40 -0.6 142,820 - hybO BNILDI_00735 0.40 +2.7 143,181 - hybO BNILDI_00735 0.72 -1.3 143,337 - hybO BNILDI_00735 0.86 +0.1 143,357 + hybO BNILDI_00735 0.88 -0.3 143,394 - +0.6 143,398 - -0.3 143,493 + -2.0 143,498 - -0.9 143,522 + -3.5 143,569 - -0.1 143,580 - -2.0 143,583 - -0.4 143,639 + +0.2 143,639 + -0.8 143,644 + -0.0 143,644 + -0.1 143,653 - +1.7 143,669 + -0.2 143,669 + +0.2 143,835 + yghW BNILDI_00740 0.55 -0.9 143,835 + yghW BNILDI_00740 0.55 +0.5 143,850 + yghW BNILDI_00740 0.60 +0.3 143,851 - yghW BNILDI_00740 0.60 -0.0 143,855 + yghW BNILDI_00740 0.61 +0.3 143,858 + yghW BNILDI_00740 0.62 +0.5 143,873 - yghW BNILDI_00740 0.68 -0.2 143,873 - yghW BNILDI_00740 0.68 -0.1 143,874 + yghW BNILDI_00740 0.68 +0.0 143,899 + yghW BNILDI_00740 0.77 -0.1 143,940 - +0.8 143,948 - +0.0 144,037 - +0.4 144,055 - -0.3 144,098 + -0.9 144,098 + +0.0 144,098 + +0.3 144,196 + dLH BNILDI_00745 0.13 -0.4 144,201 - dLH BNILDI_00745 0.13 +0.1 144,201 - dLH BNILDI_00745 0.13 -0.2 144,201 - dLH BNILDI_00745 0.13 -1.7 144,202 + dLH BNILDI_00745 0.13 -0.3 144,202 + dLH BNILDI_00745 0.13 +0.5 144,203 - dLH BNILDI_00745 0.13 -2.4 144,212 - dLH BNILDI_00745 0.14 -0.2 144,218 + dLH BNILDI_00745 0.15 -0.2 144,221 + dLH BNILDI_00745 0.15 +0.0 144,244 + dLH BNILDI_00745 0.18 +0.2 144,294 + dLH BNILDI_00745 0.24 -0.1 144,298 - dLH BNILDI_00745 0.24 +0.3 144,428 + dLH BNILDI_00745 0.39 -0.6 144,465 - dLH BNILDI_00745 0.43 -0.1
Or see this region's nucleotide sequence