Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_00695 and hybG are separated by 121 nucleotides hybG and hypA are separated by 12 nucleotides hypA and hybE overlap by 8 nucleotides hybE and hybD overlap by 8 nucleotides
BNILDI_00695: BNILDI_00695 - IS110-like element IS621 family transposase, at 135,842 to 136,822
_00695
BNILDI_00700: hybG - hydrogenase maturation factor HybG, at 136,944 to 137,192
hybG
BNILDI_00705: hypA - hydrogenase maturation nickel metallochaperone HypA, at 137,205 to 137,546
hypA
BNILDI_00710: hybE - hydrogenase-2 assembly chaperone, at 137,539 to 138,027
hybE
BNILDI_00715: hybD - HyaD/HybD family hydrogenase maturation endopeptidase, at 138,020 to 138,514
hybD
Position (kb) 136
137
138 Strain fitness (log2 ratio) -1
0
1 at 136.925 kb on + strand at 136.925 kb on + strand at 136.929 kb on + strand at 136.964 kb on - strand at 136.987 kb on - strand, within hybG at 137.121 kb on + strand, within hybG at 137.121 kb on + strand, within hybG at 137.147 kb on + strand, within hybG at 137.193 kb on + strand at 137.197 kb on - strand at 137.348 kb on + strand, within hypA at 137.348 kb on + strand, within hypA at 137.351 kb on - strand, within hypA at 137.351 kb on - strand, within hypA at 137.357 kb on + strand, within hypA at 137.358 kb on - strand, within hypA at 137.361 kb on + strand, within hypA at 137.715 kb on - strand, within hybE at 137.762 kb on + strand, within hybE at 137.893 kb on - strand, within hybE at 137.907 kb on - strand, within hybE at 137.907 kb on - strand, within hybE at 138.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 136,925 + -0.7 136,925 + -1.2 136,929 + +0.5 136,964 - -0.0 136,987 - hybG BNILDI_00700 0.17 -0.2 137,121 + hybG BNILDI_00700 0.71 +0.3 137,121 + hybG BNILDI_00700 0.71 +0.0 137,147 + hybG BNILDI_00700 0.82 +0.2 137,193 + -0.7 137,197 - -1.6 137,348 + hypA BNILDI_00705 0.42 -0.2 137,348 + hypA BNILDI_00705 0.42 -0.6 137,351 - hypA BNILDI_00705 0.43 -0.8 137,351 - hypA BNILDI_00705 0.43 +0.7 137,357 + hypA BNILDI_00705 0.44 -1.7 137,358 - hypA BNILDI_00705 0.45 -0.4 137,361 + hypA BNILDI_00705 0.46 -0.0 137,715 - hybE BNILDI_00710 0.36 +1.4 137,762 + hybE BNILDI_00710 0.46 -0.0 137,893 - hybE BNILDI_00710 0.72 +0.1 137,907 - hybE BNILDI_00710 0.75 -0.1 137,907 - hybE BNILDI_00710 0.75 -1.0 138,014 - -0.3
Or see this region's nucleotide sequence