Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssC and tssF are separated by 6 nucleotides tssF and BNILDI_00430 are separated by 3 nucleotides BNILDI_00430 and BNILDI_00435 are separated by 34 nucleotides
BNILDI_00420: tssC - type VI secretion system contractile sheath large subunit, at 85,311 to 86,786
tssC
BNILDI_00425: tssF - type VI secretion system baseplate subunit TssF, at 86,793 to 87,206
tssF
BNILDI_00430: BNILDI_00430 - Type VI secretion protein, family, at 87,210 to 87,887
_00430
BNILDI_00435: BNILDI_00435 - ImpA domain protein, at 87,922 to 88,230
_00435
Position (kb) 86
87
88 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 85.848 kb on + strand, within tssC at 85.848 kb on + strand, within tssC at 85.940 kb on + strand, within tssC at 86.101 kb on - strand, within tssC at 86.147 kb on + strand, within tssC at 86.194 kb on - strand, within tssC at 86.456 kb on + strand, within tssC at 86.508 kb on + strand, within tssC at 86.564 kb on - strand, within tssC at 86.576 kb on + strand, within tssC at 86.576 kb on + strand, within tssC at 86.577 kb on - strand, within tssC at 86.577 kb on - strand, within tssC at 86.595 kb on + strand, within tssC at 86.677 kb on + strand at 86.677 kb on + strand at 86.678 kb on - strand at 86.678 kb on - strand at 86.678 kb on - strand at 86.784 kb on + strand at 86.838 kb on - strand, within tssF at 86.912 kb on - strand, within tssF at 87.029 kb on + strand, within tssF at 87.030 kb on - strand, within tssF at 87.030 kb on - strand, within tssF at 87.030 kb on - strand, within tssF at 87.032 kb on - strand, within tssF at 87.119 kb on + strand, within tssF at 87.120 kb on - strand, within tssF at 87.425 kb on + strand, within BNILDI_00430 at 87.426 kb on - strand, within BNILDI_00430 at 87.426 kb on - strand, within BNILDI_00430 at 87.434 kb on - strand, within BNILDI_00430 at 87.441 kb on - strand, within BNILDI_00430 at 87.441 kb on - strand, within BNILDI_00430 at 87.444 kb on + strand, within BNILDI_00430 at 87.444 kb on + strand, within BNILDI_00430 at 87.444 kb on + strand, within BNILDI_00430 at 87.445 kb on - strand, within BNILDI_00430 at 87.473 kb on + strand, within BNILDI_00430 at 87.482 kb on + strand, within BNILDI_00430 at 87.483 kb on - strand, within BNILDI_00430 at 87.498 kb on - strand, within BNILDI_00430 at 87.518 kb on - strand, within BNILDI_00430 at 87.540 kb on - strand, within BNILDI_00430 at 87.540 kb on - strand, within BNILDI_00430 at 87.591 kb on - strand, within BNILDI_00430 at 87.591 kb on - strand, within BNILDI_00430 at 87.680 kb on + strand, within BNILDI_00430 at 87.789 kb on + strand, within BNILDI_00430 at 87.789 kb on + strand, within BNILDI_00430 at 87.790 kb on - strand, within BNILDI_00430 at 87.791 kb on + strand, within BNILDI_00430 at 87.792 kb on - strand, within BNILDI_00430 at 87.792 kb on - strand, within BNILDI_00430 at 87.953 kb on + strand, within BNILDI_00435 at 87.954 kb on - strand, within BNILDI_00435 at 87.971 kb on + strand, within BNILDI_00435 at 87.972 kb on - strand, within BNILDI_00435 at 88.010 kb on - strand, within BNILDI_00435 at 88.084 kb on + strand, within BNILDI_00435
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 85,848 + tssC BNILDI_00420 0.36 +0.6 85,848 + tssC BNILDI_00420 0.36 +0.9 85,940 + tssC BNILDI_00420 0.43 +0.2 86,101 - tssC BNILDI_00420 0.54 +0.2 86,147 + tssC BNILDI_00420 0.57 +1.0 86,194 - tssC BNILDI_00420 0.60 -0.1 86,456 + tssC BNILDI_00420 0.78 +0.0 86,508 + tssC BNILDI_00420 0.81 +0.8 86,564 - tssC BNILDI_00420 0.85 -0.3 86,576 + tssC BNILDI_00420 0.86 +0.5 86,576 + tssC BNILDI_00420 0.86 -0.4 86,577 - tssC BNILDI_00420 0.86 +0.1 86,577 - tssC BNILDI_00420 0.86 +0.3 86,595 + tssC BNILDI_00420 0.87 +0.5 86,677 + -0.9 86,677 + -0.5 86,678 - +0.4 86,678 - +0.4 86,678 - -1.6 86,784 + +1.8 86,838 - tssF BNILDI_00425 0.11 +0.3 86,912 - tssF BNILDI_00425 0.29 -0.2 87,029 + tssF BNILDI_00425 0.57 -0.5 87,030 - tssF BNILDI_00425 0.57 +1.0 87,030 - tssF BNILDI_00425 0.57 +0.2 87,030 - tssF BNILDI_00425 0.57 -0.5 87,032 - tssF BNILDI_00425 0.58 -2.3 87,119 + tssF BNILDI_00425 0.79 +0.2 87,120 - tssF BNILDI_00425 0.79 -0.1 87,425 + BNILDI_00430 0.32 -0.2 87,426 - BNILDI_00430 0.32 -0.2 87,426 - BNILDI_00430 0.32 +0.6 87,434 - BNILDI_00430 0.33 +0.0 87,441 - BNILDI_00430 0.34 -0.3 87,441 - BNILDI_00430 0.34 -0.3 87,444 + BNILDI_00430 0.35 +1.9 87,444 + BNILDI_00430 0.35 -0.3 87,444 + BNILDI_00430 0.35 -0.2 87,445 - BNILDI_00430 0.35 +1.0 87,473 + BNILDI_00430 0.39 +0.2 87,482 + BNILDI_00430 0.40 +1.0 87,483 - BNILDI_00430 0.40 +0.2 87,498 - BNILDI_00430 0.42 -1.1 87,518 - BNILDI_00430 0.45 +0.4 87,540 - BNILDI_00430 0.49 +0.1 87,540 - BNILDI_00430 0.49 -0.8 87,591 - BNILDI_00430 0.56 +0.5 87,591 - BNILDI_00430 0.56 -0.2 87,680 + BNILDI_00430 0.69 -0.6 87,789 + BNILDI_00430 0.85 +0.4 87,789 + BNILDI_00430 0.85 +0.2 87,790 - BNILDI_00430 0.86 -0.5 87,791 + BNILDI_00430 0.86 -0.1 87,792 - BNILDI_00430 0.86 +1.2 87,792 - BNILDI_00430 0.86 +1.7 87,953 + BNILDI_00435 0.10 -0.3 87,954 - BNILDI_00435 0.10 +1.3 87,971 + BNILDI_00435 0.16 +0.4 87,972 - BNILDI_00435 0.16 +0.1 88,010 - BNILDI_00435 0.28 -0.4 88,084 + BNILDI_00435 0.52 +2.9
Or see this region's nucleotide sequence