Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafL and dinJ are separated by 185 nucleotides dinJ and yafQ are separated by 2 nucleotides yafQ and dpaA are separated by 155 nucleotides dpaA and yafJ overlap by 30 nucleotides yafJ and lpcA are separated by 205 nucleotides
BNILDI_00315: yafL - putative endopeptidase YafL, at 67,562 to 68,335
yafL
BNILDI_00320: dinJ - type II toxin-antitoxin system antitoxin DinJ, at 68,521 to 68,781
dinJ
BNILDI_00325: yafQ - type II toxin-antitoxin system mRNA interferase toxin YafQ, at 68,784 to 69,062
yafQ
BNILDI_00330: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 69,218 to 69,958
dpaA
BNILDI_00335: yafJ - Putative glutamine amidotransferase YafJ, at 69,929 to 70,696
yafJ
BNILDI_00345: lpcA - D-sedoheptulose 7-phosphate isomerase, at 70,902 to 71,480
lpcA
Position (kb) 69
70 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 68.218 kb on + strand, within yafL at 68.218 kb on + strand, within yafL at 68.218 kb on + strand, within yafL at 68.219 kb on - strand, within yafL at 68.376 kb on - strand at 68.440 kb on + strand at 68.514 kb on + strand at 68.586 kb on - strand, within dinJ at 68.673 kb on - strand, within dinJ at 68.690 kb on + strand, within dinJ at 68.760 kb on - strand at 68.852 kb on + strand, within yafQ at 68.875 kb on - strand, within yafQ at 68.875 kb on - strand, within yafQ at 68.891 kb on + strand, within yafQ at 68.922 kb on + strand, within yafQ at 68.997 kb on + strand, within yafQ at 69.005 kb on + strand, within yafQ at 69.085 kb on + strand at 69.111 kb on - strand at 69.152 kb on + strand at 69.152 kb on + strand at 69.169 kb on + strand at 69.170 kb on - strand at 69.200 kb on + strand at 69.201 kb on - strand at 69.210 kb on + strand at 69.211 kb on - strand at 69.217 kb on + strand at 69.224 kb on - strand at 69.235 kb on - strand at 69.293 kb on - strand, within dpaA at 69.293 kb on - strand, within dpaA at 69.320 kb on + strand, within dpaA at 69.321 kb on - strand, within dpaA at 69.322 kb on + strand, within dpaA at 69.322 kb on + strand, within dpaA at 69.322 kb on + strand, within dpaA at 69.323 kb on - strand, within dpaA at 69.350 kb on + strand, within dpaA at 69.351 kb on - strand, within dpaA at 69.443 kb on + strand, within dpaA at 69.505 kb on + strand, within dpaA at 69.518 kb on - strand, within dpaA at 69.545 kb on + strand, within dpaA at 69.556 kb on + strand, within dpaA at 69.596 kb on + strand, within dpaA at 69.647 kb on + strand, within dpaA at 69.734 kb on - strand, within dpaA at 69.734 kb on - strand, within dpaA at 69.764 kb on - strand, within dpaA at 69.779 kb on + strand, within dpaA at 69.780 kb on - strand, within dpaA at 69.780 kb on - strand, within dpaA at 69.878 kb on + strand, within dpaA at 69.935 kb on + strand at 69.936 kb on - strand at 69.936 kb on - strand at 69.956 kb on + strand at 69.976 kb on + strand at 70.132 kb on + strand, within yafJ at 70.224 kb on + strand, within yafJ at 70.224 kb on + strand, within yafJ at 70.224 kb on + strand, within yafJ at 70.224 kb on + strand, within yafJ at 70.279 kb on + strand, within yafJ at 70.384 kb on - strand, within yafJ at 70.384 kb on - strand, within yafJ at 70.384 kb on - strand, within yafJ at 70.453 kb on + strand, within yafJ at 70.567 kb on + strand, within yafJ at 70.575 kb on + strand, within yafJ at 70.600 kb on + strand, within yafJ at 70.600 kb on + strand, within yafJ at 70.646 kb on - strand at 70.782 kb on + strand at 70.813 kb on - strand at 70.822 kb on - strand at 70.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 68,218 + yafL BNILDI_00315 0.85 -3.3 68,218 + yafL BNILDI_00315 0.85 +1.1 68,218 + yafL BNILDI_00315 0.85 -0.1 68,219 - yafL BNILDI_00315 0.85 -0.0 68,376 - -0.0 68,440 + +0.5 68,514 + -1.3 68,586 - dinJ BNILDI_00320 0.25 +1.0 68,673 - dinJ BNILDI_00320 0.58 +0.1 68,690 + dinJ BNILDI_00320 0.65 +1.0 68,760 - +0.7 68,852 + yafQ BNILDI_00325 0.24 +0.3 68,875 - yafQ BNILDI_00325 0.33 -1.4 68,875 - yafQ BNILDI_00325 0.33 -3.5 68,891 + yafQ BNILDI_00325 0.38 -1.1 68,922 + yafQ BNILDI_00325 0.49 -0.4 68,997 + yafQ BNILDI_00325 0.76 +0.3 69,005 + yafQ BNILDI_00325 0.79 +0.3 69,085 + +0.3 69,111 - -2.8 69,152 + -0.7 69,152 + +0.5 69,169 + +1.9 69,170 - +0.1 69,200 + -0.7 69,201 - -0.5 69,210 + +0.3 69,211 - -0.5 69,217 + +0.4 69,224 - -0.2 69,235 - +1.7 69,293 - dpaA BNILDI_00330 0.10 +0.5 69,293 - dpaA BNILDI_00330 0.10 +0.9 69,320 + dpaA BNILDI_00330 0.14 -3.1 69,321 - dpaA BNILDI_00330 0.14 -0.4 69,322 + dpaA BNILDI_00330 0.14 -0.0 69,322 + dpaA BNILDI_00330 0.14 +0.6 69,322 + dpaA BNILDI_00330 0.14 -0.0 69,323 - dpaA BNILDI_00330 0.14 +0.3 69,350 + dpaA BNILDI_00330 0.18 -0.2 69,351 - dpaA BNILDI_00330 0.18 +0.4 69,443 + dpaA BNILDI_00330 0.30 +0.6 69,505 + dpaA BNILDI_00330 0.39 +0.1 69,518 - dpaA BNILDI_00330 0.40 -0.3 69,545 + dpaA BNILDI_00330 0.44 +0.7 69,556 + dpaA BNILDI_00330 0.46 -0.3 69,596 + dpaA BNILDI_00330 0.51 +0.9 69,647 + dpaA BNILDI_00330 0.58 -0.4 69,734 - dpaA BNILDI_00330 0.70 -2.0 69,734 - dpaA BNILDI_00330 0.70 +0.5 69,764 - dpaA BNILDI_00330 0.74 +0.0 69,779 + dpaA BNILDI_00330 0.76 -0.6 69,780 - dpaA BNILDI_00330 0.76 -2.1 69,780 - dpaA BNILDI_00330 0.76 +0.2 69,878 + dpaA BNILDI_00330 0.89 -1.4 69,935 + -0.0 69,936 - -3.2 69,936 - +0.9 69,956 + -2.2 69,976 + -1.0 70,132 + yafJ BNILDI_00335 0.26 +0.0 70,224 + yafJ BNILDI_00335 0.38 +1.9 70,224 + yafJ BNILDI_00335 0.38 -0.0 70,224 + yafJ BNILDI_00335 0.38 +0.3 70,224 + yafJ BNILDI_00335 0.38 +0.0 70,279 + yafJ BNILDI_00335 0.46 +0.4 70,384 - yafJ BNILDI_00335 0.59 -2.9 70,384 - yafJ BNILDI_00335 0.59 +2.2 70,384 - yafJ BNILDI_00335 0.59 -0.1 70,453 + yafJ BNILDI_00335 0.68 +0.1 70,567 + yafJ BNILDI_00335 0.83 -0.7 70,575 + yafJ BNILDI_00335 0.84 -1.0 70,600 + yafJ BNILDI_00335 0.87 +0.7 70,600 + yafJ BNILDI_00335 0.87 -0.6 70,646 - -0.5 70,782 + +0.0 70,813 - +0.0 70,822 - -0.1 70,904 - +0.1
Or see this region's nucleotide sequence