Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asnC and mioC are separated by 89 nucleotides mioC and mnmG are separated by 377 nucleotides mnmG and rsmG are separated by 63 nucleotides
NOLOHH_06910: asnC - transcriptional regulator AsnC, at 1,307,621 to 1,308,079
asnC
NOLOHH_06915: mioC - FMN-binding protein MioC, at 1,308,169 to 1,308,612
mioC
NOLOHH_06920: mnmG - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 1,308,990 to 1,310,879
mnmG
NOLOHH_06925: rsmG - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 1,310,943 to 1,311,566
rsmG
Position (kb)
1308
1309
1310
1311 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1307.990 kb on - strand, within asnC at 1307.990 kb on - strand, within asnC at 1307.990 kb on - strand, within asnC at 1308.035 kb on + strand at 1308.065 kb on - strand at 1308.078 kb on - strand at 1308.090 kb on + strand at 1308.112 kb on + strand at 1308.112 kb on + strand at 1308.113 kb on - strand at 1308.113 kb on - strand at 1308.135 kb on + strand at 1308.135 kb on + strand at 1308.135 kb on + strand at 1308.135 kb on + strand at 1308.135 kb on + strand at 1308.135 kb on + strand at 1308.135 kb on + strand at 1308.136 kb on - strand at 1308.136 kb on - strand at 1308.136 kb on - strand at 1308.136 kb on - strand at 1308.136 kb on - strand at 1308.136 kb on - strand at 1308.151 kb on + strand at 1308.151 kb on + strand at 1308.152 kb on - strand at 1308.154 kb on + strand at 1308.154 kb on + strand at 1308.155 kb on - strand at 1308.168 kb on + strand at 1308.169 kb on - strand at 1308.177 kb on + strand at 1308.177 kb on + strand at 1308.181 kb on - strand at 1308.187 kb on - strand at 1308.217 kb on + strand, within mioC at 1308.217 kb on + strand, within mioC at 1308.217 kb on + strand, within mioC at 1308.218 kb on - strand, within mioC at 1308.218 kb on - strand, within mioC at 1308.218 kb on - strand, within mioC at 1308.221 kb on + strand, within mioC at 1308.221 kb on + strand, within mioC at 1308.222 kb on - strand, within mioC at 1308.222 kb on - strand, within mioC at 1308.222 kb on - strand, within mioC at 1308.261 kb on + strand, within mioC at 1308.299 kb on + strand, within mioC at 1308.299 kb on + strand, within mioC at 1308.299 kb on + strand, within mioC at 1308.324 kb on + strand, within mioC at 1308.351 kb on + strand, within mioC at 1308.352 kb on - strand, within mioC at 1308.376 kb on + strand, within mioC at 1308.377 kb on - strand, within mioC at 1308.440 kb on + strand, within mioC at 1308.442 kb on - strand, within mioC at 1308.451 kb on + strand, within mioC at 1308.452 kb on - strand, within mioC at 1308.477 kb on + strand, within mioC at 1308.610 kb on + strand at 1308.610 kb on + strand at 1308.610 kb on + strand at 1308.611 kb on - strand at 1308.611 kb on - strand at 1308.611 kb on - strand at 1308.874 kb on + strand at 1308.887 kb on + strand at 1308.888 kb on - strand at 1308.965 kb on + strand at 1308.965 kb on + strand at 1309.103 kb on + strand at 1309.240 kb on + strand, within mnmG at 1309.316 kb on + strand, within mnmG at 1309.316 kb on + strand, within mnmG at 1309.497 kb on + strand, within mnmG at 1309.625 kb on + strand, within mnmG at 1309.625 kb on + strand, within mnmG at 1309.625 kb on + strand, within mnmG at 1309.716 kb on + strand, within mnmG at 1309.716 kb on + strand, within mnmG at 1309.717 kb on - strand, within mnmG at 1309.717 kb on - strand, within mnmG at 1309.717 kb on - strand, within mnmG at 1309.717 kb on - strand, within mnmG at 1309.719 kb on - strand, within mnmG at 1309.782 kb on + strand, within mnmG at 1309.782 kb on + strand, within mnmG at 1309.782 kb on + strand, within mnmG at 1309.782 kb on + strand, within mnmG at 1309.782 kb on + strand, within mnmG at 1309.783 kb on - strand, within mnmG at 1309.902 kb on - strand, within mnmG at 1309.911 kb on + strand, within mnmG at 1309.970 kb on + strand, within mnmG at 1310.022 kb on + strand, within mnmG at 1310.072 kb on + strand, within mnmG at 1310.215 kb on - strand, within mnmG at 1310.215 kb on - strand, within mnmG at 1310.224 kb on + strand, within mnmG at 1310.270 kb on + strand, within mnmG at 1310.276 kb on + strand, within mnmG at 1310.277 kb on - strand, within mnmG at 1310.627 kb on + strand, within mnmG at 1310.640 kb on + strand, within mnmG at 1310.640 kb on + strand, within mnmG at 1310.640 kb on + strand, within mnmG at 1310.642 kb on + strand, within mnmG at 1310.739 kb on - strand at 1310.760 kb on - strand at 1310.858 kb on + strand at 1310.858 kb on + strand at 1310.885 kb on + strand at 1310.885 kb on + strand at 1310.935 kb on + strand at 1310.936 kb on - strand at 1310.936 kb on - strand at 1310.936 kb on - strand at 1310.962 kb on + strand at 1310.963 kb on - strand at 1310.981 kb on + strand at 1310.981 kb on + strand at 1310.981 kb on + strand at 1310.981 kb on + strand at 1310.982 kb on - strand at 1310.982 kb on - strand at 1310.982 kb on - strand at 1311.014 kb on + strand, within rsmG at 1311.014 kb on + strand, within rsmG at 1311.014 kb on + strand, within rsmG at 1311.015 kb on - strand, within rsmG at 1311.021 kb on + strand, within rsmG at 1311.029 kb on + strand, within rsmG at 1311.038 kb on + strand, within rsmG at 1311.038 kb on + strand, within rsmG at 1311.038 kb on + strand, within rsmG at 1311.038 kb on + strand, within rsmG at 1311.039 kb on - strand, within rsmG at 1311.039 kb on - strand, within rsmG at 1311.039 kb on - strand, within rsmG at 1311.055 kb on - strand, within rsmG at 1311.055 kb on - strand, within rsmG at 1311.080 kb on + strand, within rsmG at 1311.080 kb on + strand, within rsmG at 1311.095 kb on - strand, within rsmG at 1311.129 kb on + strand, within rsmG at 1311.129 kb on + strand, within rsmG at 1311.130 kb on - strand, within rsmG at 1311.194 kb on + strand, within rsmG at 1311.195 kb on - strand, within rsmG at 1311.195 kb on - strand, within rsmG at 1311.195 kb on - strand, within rsmG at 1311.195 kb on - strand, within rsmG at 1311.313 kb on + strand, within rsmG at 1311.314 kb on - strand, within rsmG at 1311.349 kb on + strand, within rsmG at 1311.350 kb on - strand, within rsmG at 1311.350 kb on - strand, within rsmG at 1311.354 kb on - strand, within rsmG at 1311.480 kb on + strand, within rsmG at 1311.481 kb on - strand, within rsmG at 1311.481 kb on - strand, within rsmG at 1311.481 kb on - strand, within rsmG at 1311.602 kb on - strand at 1311.610 kb on - strand at 1311.636 kb on + strand at 1311.636 kb on + strand at 1311.683 kb on + strand at 1311.702 kb on - strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.853 kb on - strand at 1311.857 kb on - strand at 1311.861 kb on + strand at 1311.861 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,307,990 - asnC NOLOHH_06910 0.80 +0.6 1,307,990 - asnC NOLOHH_06910 0.80 -0.7 1,307,990 - asnC NOLOHH_06910 0.80 +0.0 1,308,035 + +0.1 1,308,065 - +1.9 1,308,078 - +0.1 1,308,090 + -0.1 1,308,112 + +0.0 1,308,112 + -0.3 1,308,113 - +1.0 1,308,113 - -1.0 1,308,135 + -0.5 1,308,135 + +0.2 1,308,135 + +0.2 1,308,135 + +0.4 1,308,135 + -0.4 1,308,135 + -1.7 1,308,135 + +0.1 1,308,136 - +0.3 1,308,136 - +0.8 1,308,136 - -0.4 1,308,136 - -1.2 1,308,136 - -0.6 1,308,136 - -0.4 1,308,151 + -0.2 1,308,151 + -0.6 1,308,152 - -2.0 1,308,154 + +2.5 1,308,154 + -0.1 1,308,155 - -0.2 1,308,168 + -1.1 1,308,169 - +0.3 1,308,177 + -1.9 1,308,177 + -0.3 1,308,181 - -0.1 1,308,187 - -1.4 1,308,217 + mioC NOLOHH_06915 0.11 +1.2 1,308,217 + mioC NOLOHH_06915 0.11 +1.2 1,308,217 + mioC NOLOHH_06915 0.11 +0.5 1,308,218 - mioC NOLOHH_06915 0.11 -1.7 1,308,218 - mioC NOLOHH_06915 0.11 -0.5 1,308,218 - mioC NOLOHH_06915 0.11 +1.6 1,308,221 + mioC NOLOHH_06915 0.12 +0.2 1,308,221 + mioC NOLOHH_06915 0.12 -0.3 1,308,222 - mioC NOLOHH_06915 0.12 -0.3 1,308,222 - mioC NOLOHH_06915 0.12 +0.1 1,308,222 - mioC NOLOHH_06915 0.12 +1.0 1,308,261 + mioC NOLOHH_06915 0.21 -1.3 1,308,299 + mioC NOLOHH_06915 0.29 -0.6 1,308,299 + mioC NOLOHH_06915 0.29 +0.5 1,308,299 + mioC NOLOHH_06915 0.29 +0.2 1,308,324 + mioC NOLOHH_06915 0.35 +0.1 1,308,351 + mioC NOLOHH_06915 0.41 +0.2 1,308,352 - mioC NOLOHH_06915 0.41 +0.1 1,308,376 + mioC NOLOHH_06915 0.47 -0.9 1,308,377 - mioC NOLOHH_06915 0.47 +2.1 1,308,440 + mioC NOLOHH_06915 0.61 +1.4 1,308,442 - mioC NOLOHH_06915 0.61 -0.0 1,308,451 + mioC NOLOHH_06915 0.64 +1.1 1,308,452 - mioC NOLOHH_06915 0.64 -0.7 1,308,477 + mioC NOLOHH_06915 0.69 -0.8 1,308,610 + -0.9 1,308,610 + -0.5 1,308,610 + -0.6 1,308,611 - +0.3 1,308,611 - +0.2 1,308,611 - +0.7 1,308,874 + +0.5 1,308,887 + -0.1 1,308,888 - +0.7 1,308,965 + +0.6 1,308,965 + +0.3 1,309,103 + -1.8 1,309,240 + mnmG NOLOHH_06920 0.13 -1.8 1,309,316 + mnmG NOLOHH_06920 0.17 -1.4 1,309,316 + mnmG NOLOHH_06920 0.17 -0.4 1,309,497 + mnmG NOLOHH_06920 0.27 -3.4 1,309,625 + mnmG NOLOHH_06920 0.34 -2.3 1,309,625 + mnmG NOLOHH_06920 0.34 -1.9 1,309,625 + mnmG NOLOHH_06920 0.34 -1.8 1,309,716 + mnmG NOLOHH_06920 0.38 -1.5 1,309,716 + mnmG NOLOHH_06920 0.38 -2.3 1,309,717 - mnmG NOLOHH_06920 0.38 -0.6 1,309,717 - mnmG NOLOHH_06920 0.38 -1.6 1,309,717 - mnmG NOLOHH_06920 0.38 -0.8 1,309,717 - mnmG NOLOHH_06920 0.38 +0.2 1,309,719 - mnmG NOLOHH_06920 0.39 -1.3 1,309,782 + mnmG NOLOHH_06920 0.42 -3.1 1,309,782 + mnmG NOLOHH_06920 0.42 -0.8 1,309,782 + mnmG NOLOHH_06920 0.42 +0.2 1,309,782 + mnmG NOLOHH_06920 0.42 -1.5 1,309,782 + mnmG NOLOHH_06920 0.42 -2.0 1,309,783 - mnmG NOLOHH_06920 0.42 -2.0 1,309,902 - mnmG NOLOHH_06920 0.48 -1.4 1,309,911 + mnmG NOLOHH_06920 0.49 +0.2 1,309,970 + mnmG NOLOHH_06920 0.52 -2.8 1,310,022 + mnmG NOLOHH_06920 0.55 -2.1 1,310,072 + mnmG NOLOHH_06920 0.57 -0.5 1,310,215 - mnmG NOLOHH_06920 0.65 -1.7 1,310,215 - mnmG NOLOHH_06920 0.65 -0.5 1,310,224 + mnmG NOLOHH_06920 0.65 -3.7 1,310,270 + mnmG NOLOHH_06920 0.68 -1.0 1,310,276 + mnmG NOLOHH_06920 0.68 -3.5 1,310,277 - mnmG NOLOHH_06920 0.68 -1.3 1,310,627 + mnmG NOLOHH_06920 0.87 -2.3 1,310,640 + mnmG NOLOHH_06920 0.87 -1.4 1,310,640 + mnmG NOLOHH_06920 0.87 -2.2 1,310,640 + mnmG NOLOHH_06920 0.87 -1.8 1,310,642 + mnmG NOLOHH_06920 0.87 -2.4 1,310,739 - -0.8 1,310,760 - -1.8 1,310,858 + -1.7 1,310,858 + +0.1 1,310,885 + -0.2 1,310,885 + +1.1 1,310,935 + +0.5 1,310,936 - +0.7 1,310,936 - +0.5 1,310,936 - +1.2 1,310,962 + +0.3 1,310,963 - +1.5 1,310,981 + +0.2 1,310,981 + -1.1 1,310,981 + +1.2 1,310,981 + +1.8 1,310,982 - +0.1 1,310,982 - +0.5 1,310,982 - +0.4 1,311,014 + rsmG NOLOHH_06925 0.11 +0.3 1,311,014 + rsmG NOLOHH_06925 0.11 +0.6 1,311,014 + rsmG NOLOHH_06925 0.11 +1.1 1,311,015 - rsmG NOLOHH_06925 0.12 +0.7 1,311,021 + rsmG NOLOHH_06925 0.12 -0.5 1,311,029 + rsmG NOLOHH_06925 0.14 +0.5 1,311,038 + rsmG NOLOHH_06925 0.15 +0.1 1,311,038 + rsmG NOLOHH_06925 0.15 +0.7 1,311,038 + rsmG NOLOHH_06925 0.15 +0.0 1,311,038 + rsmG NOLOHH_06925 0.15 +1.5 1,311,039 - rsmG NOLOHH_06925 0.15 +1.5 1,311,039 - rsmG NOLOHH_06925 0.15 +0.7 1,311,039 - rsmG NOLOHH_06925 0.15 +1.3 1,311,055 - rsmG NOLOHH_06925 0.18 +1.0 1,311,055 - rsmG NOLOHH_06925 0.18 +1.3 1,311,080 + rsmG NOLOHH_06925 0.22 +1.3 1,311,080 + rsmG NOLOHH_06925 0.22 +1.2 1,311,095 - rsmG NOLOHH_06925 0.24 +1.1 1,311,129 + rsmG NOLOHH_06925 0.30 +0.6 1,311,129 + rsmG NOLOHH_06925 0.30 +0.9 1,311,130 - rsmG NOLOHH_06925 0.30 +0.6 1,311,194 + rsmG NOLOHH_06925 0.40 +0.8 1,311,195 - rsmG NOLOHH_06925 0.40 +0.5 1,311,195 - rsmG NOLOHH_06925 0.40 +1.2 1,311,195 - rsmG NOLOHH_06925 0.40 -0.1 1,311,195 - rsmG NOLOHH_06925 0.40 +1.2 1,311,313 + rsmG NOLOHH_06925 0.59 +0.4 1,311,314 - rsmG NOLOHH_06925 0.59 +2.0 1,311,349 + rsmG NOLOHH_06925 0.65 +1.7 1,311,350 - rsmG NOLOHH_06925 0.65 +0.5 1,311,350 - rsmG NOLOHH_06925 0.65 +1.1 1,311,354 - rsmG NOLOHH_06925 0.66 +1.4 1,311,480 + rsmG NOLOHH_06925 0.86 +0.3 1,311,481 - rsmG NOLOHH_06925 0.86 +0.5 1,311,481 - rsmG NOLOHH_06925 0.86 -1.3 1,311,481 - rsmG NOLOHH_06925 0.86 +1.5 1,311,602 - +0.6 1,311,610 - -0.4 1,311,636 + -0.2 1,311,636 + +0.2 1,311,683 + -0.7 1,311,702 - -1.5 1,311,852 + +0.1 1,311,852 + +0.0 1,311,852 + -0.1 1,311,852 + -0.1 1,311,853 - +0.5 1,311,857 - +0.8 1,311,861 + +0.9 1,311,861 + -0.4
Or see this region's nucleotide sequence