Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dtpC and lysS are separated by 236 nucleotides lysS and ghoT are separated by 118 nucleotides ghoT and ghoS are separated by 27 nucleotides ghoS and yjdJ are separated by 226 nucleotides
NOLOHH_04745: dtpC - dipeptide/tripeptide permease DtpC, at 863,211 to 864,668
dtpC
NOLOHH_04750: lysS - lysine--tRNA ligase, at 864,905 to 866,422
lysS
NOLOHH_04755: ghoT - type V toxin-antitoxin system toxin GhoT, at 866,541 to 866,714
ghoT
NOLOHH_04760: ghoS - type V toxin-antitoxin system endoribonuclease antitoxin GhoS, at 866,742 to 867,038
ghoS
NOLOHH_04765: yjdJ - Uncharacterized protein YjdJ, at 867,265 to 867,537
yjdJ
Position (kb) 864
865
866
867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 863.919 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.014 kb on - strand, within dtpC at 864.014 kb on - strand, within dtpC at 864.014 kb on - strand, within dtpC at 864.068 kb on + strand, within dtpC at 864.116 kb on + strand, within dtpC at 864.117 kb on - strand, within dtpC at 864.124 kb on + strand, within dtpC at 864.124 kb on + strand, within dtpC at 864.125 kb on - strand, within dtpC at 864.128 kb on + strand, within dtpC at 864.128 kb on + strand, within dtpC at 864.128 kb on + strand, within dtpC at 864.129 kb on - strand, within dtpC at 864.129 kb on - strand, within dtpC at 864.129 kb on - strand, within dtpC at 864.129 kb on - strand, within dtpC at 864.256 kb on + strand, within dtpC at 864.256 kb on + strand, within dtpC at 864.257 kb on - strand, within dtpC at 864.257 kb on - strand, within dtpC at 864.278 kb on + strand, within dtpC at 864.278 kb on + strand, within dtpC at 864.279 kb on - strand, within dtpC at 864.279 kb on - strand, within dtpC at 864.279 kb on - strand, within dtpC at 864.279 kb on - strand, within dtpC at 864.381 kb on - strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.445 kb on - strand, within dtpC at 864.445 kb on - strand, within dtpC at 864.445 kb on - strand, within dtpC at 864.445 kb on - strand, within dtpC at 864.446 kb on + strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.518 kb on + strand, within dtpC at 864.601 kb on + strand at 864.644 kb on + strand at 864.645 kb on - strand at 864.649 kb on + strand at 864.735 kb on - strand at 864.737 kb on + strand at 864.738 kb on - strand at 864.763 kb on + strand at 864.764 kb on - strand at 864.767 kb on + strand at 864.767 kb on + strand at 864.767 kb on + strand at 864.768 kb on - strand at 864.768 kb on - strand at 864.770 kb on + strand at 864.776 kb on + strand at 864.790 kb on - strand at 864.790 kb on - strand at 864.796 kb on + strand at 864.797 kb on - strand at 864.810 kb on + strand at 864.811 kb on - strand at 864.821 kb on - strand at 864.821 kb on - strand at 864.823 kb on + strand at 864.824 kb on - strand at 864.826 kb on + strand at 864.840 kb on - strand at 864.840 kb on - strand at 864.842 kb on + strand at 864.842 kb on + strand at 864.842 kb on + strand at 864.842 kb on + strand at 864.842 kb on + strand at 864.850 kb on - strand at 864.865 kb on + strand at 864.870 kb on - strand at 864.870 kb on - strand at 864.892 kb on + strand at 864.990 kb on + strand at 864.990 kb on + strand at 865.036 kb on + strand at 865.037 kb on - strand at 865.075 kb on + strand, within lysS at 865.139 kb on - strand, within lysS at 865.139 kb on - strand, within lysS at 865.162 kb on - strand, within lysS at 865.196 kb on + strand, within lysS at 865.196 kb on + strand, within lysS at 865.196 kb on + strand, within lysS at 865.197 kb on - strand, within lysS at 865.197 kb on - strand, within lysS at 865.211 kb on - strand, within lysS at 865.229 kb on + strand, within lysS at 865.231 kb on + strand, within lysS at 865.231 kb on + strand, within lysS at 865.325 kb on - strand, within lysS at 865.354 kb on - strand, within lysS at 865.354 kb on - strand, within lysS at 865.354 kb on - strand, within lysS at 865.362 kb on + strand, within lysS at 865.369 kb on + strand, within lysS at 865.438 kb on + strand, within lysS at 865.521 kb on + strand, within lysS at 865.522 kb on - strand, within lysS at 865.543 kb on - strand, within lysS at 865.543 kb on - strand, within lysS at 865.599 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.607 kb on + strand, within lysS at 865.607 kb on + strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.631 kb on + strand, within lysS at 865.631 kb on + strand, within lysS at 865.650 kb on + strand, within lysS at 865.684 kb on + strand, within lysS at 865.702 kb on + strand, within lysS at 865.702 kb on + strand, within lysS at 865.702 kb on + strand, within lysS at 865.745 kb on + strand, within lysS at 865.745 kb on + strand, within lysS at 865.745 kb on + strand, within lysS at 865.754 kb on + strand, within lysS at 865.755 kb on - strand, within lysS at 865.841 kb on + strand, within lysS at 865.842 kb on - strand, within lysS at 865.910 kb on + strand, within lysS at 865.976 kb on - strand, within lysS at 866.014 kb on + strand, within lysS at 866.014 kb on + strand, within lysS at 866.014 kb on + strand, within lysS at 866.015 kb on - strand, within lysS at 866.015 kb on - strand, within lysS at 866.015 kb on - strand, within lysS at 866.015 kb on - strand, within lysS at 866.015 kb on - strand, within lysS at 866.071 kb on + strand, within lysS at 866.113 kb on + strand, within lysS at 866.186 kb on - strand, within lysS at 866.273 kb on + strand at 866.274 kb on - strand at 866.274 kb on - strand at 866.285 kb on + strand at 866.303 kb on + strand at 866.304 kb on - strand at 866.354 kb on - strand at 866.375 kb on - strand at 866.375 kb on - strand at 866.378 kb on - strand at 866.433 kb on - strand at 866.533 kb on + strand at 866.534 kb on - strand at 866.621 kb on + strand, within ghoT at 866.622 kb on - strand, within ghoT at 866.622 kb on - strand, within ghoT at 866.664 kb on + strand, within ghoT at 866.822 kb on + strand, within ghoS at 866.940 kb on - strand, within ghoS at 866.944 kb on + strand, within ghoS at 866.944 kb on + strand, within ghoS at 866.980 kb on + strand, within ghoS at 867.010 kb on + strand at 867.010 kb on + strand at 867.011 kb on - strand at 867.011 kb on - strand at 867.051 kb on - strand at 867.110 kb on + strand at 867.117 kb on + strand at 867.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 863,919 + dtpC NOLOHH_04745 0.49 +0.8 864,013 + dtpC NOLOHH_04745 0.55 +0.5 864,013 + dtpC NOLOHH_04745 0.55 +0.6 864,013 + dtpC NOLOHH_04745 0.55 -0.4 864,013 + dtpC NOLOHH_04745 0.55 -3.3 864,013 + dtpC NOLOHH_04745 0.55 -0.2 864,014 - dtpC NOLOHH_04745 0.55 -3.6 864,014 - dtpC NOLOHH_04745 0.55 +0.5 864,014 - dtpC NOLOHH_04745 0.55 +0.3 864,068 + dtpC NOLOHH_04745 0.59 -0.1 864,116 + dtpC NOLOHH_04745 0.62 +0.8 864,117 - dtpC NOLOHH_04745 0.62 -0.6 864,124 + dtpC NOLOHH_04745 0.63 +0.0 864,124 + dtpC NOLOHH_04745 0.63 -0.1 864,125 - dtpC NOLOHH_04745 0.63 -0.7 864,128 + dtpC NOLOHH_04745 0.63 -0.9 864,128 + dtpC NOLOHH_04745 0.63 +0.4 864,128 + dtpC NOLOHH_04745 0.63 +0.7 864,129 - dtpC NOLOHH_04745 0.63 -0.1 864,129 - dtpC NOLOHH_04745 0.63 +1.1 864,129 - dtpC NOLOHH_04745 0.63 +0.0 864,129 - dtpC NOLOHH_04745 0.63 -0.2 864,256 + dtpC NOLOHH_04745 0.72 -0.4 864,256 + dtpC NOLOHH_04745 0.72 -0.4 864,257 - dtpC NOLOHH_04745 0.72 +0.2 864,257 - dtpC NOLOHH_04745 0.72 -0.8 864,278 + dtpC NOLOHH_04745 0.73 +0.9 864,278 + dtpC NOLOHH_04745 0.73 +0.3 864,279 - dtpC NOLOHH_04745 0.73 -0.1 864,279 - dtpC NOLOHH_04745 0.73 +0.5 864,279 - dtpC NOLOHH_04745 0.73 -1.1 864,279 - dtpC NOLOHH_04745 0.73 -0.9 864,381 - dtpC NOLOHH_04745 0.80 -0.2 864,444 + dtpC NOLOHH_04745 0.85 +0.6 864,444 + dtpC NOLOHH_04745 0.85 +0.7 864,444 + dtpC NOLOHH_04745 0.85 +0.6 864,444 + dtpC NOLOHH_04745 0.85 +0.2 864,444 + dtpC NOLOHH_04745 0.85 +0.2 864,444 + dtpC NOLOHH_04745 0.85 -0.8 864,444 + dtpC NOLOHH_04745 0.85 +0.5 864,444 + dtpC NOLOHH_04745 0.85 -0.5 864,444 + dtpC NOLOHH_04745 0.85 +0.1 864,445 - dtpC NOLOHH_04745 0.85 +0.3 864,445 - dtpC NOLOHH_04745 0.85 +0.2 864,445 - dtpC NOLOHH_04745 0.85 +2.4 864,445 - dtpC NOLOHH_04745 0.85 -1.1 864,446 + dtpC NOLOHH_04745 0.85 +0.5 864,447 - dtpC NOLOHH_04745 0.85 -0.4 864,447 - dtpC NOLOHH_04745 0.85 +1.2 864,447 - dtpC NOLOHH_04745 0.85 -0.3 864,447 - dtpC NOLOHH_04745 0.85 -0.9 864,447 - dtpC NOLOHH_04745 0.85 -0.7 864,518 + dtpC NOLOHH_04745 0.90 +0.0 864,601 + -0.1 864,644 + -0.1 864,645 - +1.0 864,649 + +0.5 864,735 - +0.0 864,737 + -0.7 864,738 - -0.1 864,763 + -0.7 864,764 - +1.7 864,767 + +0.4 864,767 + -1.5 864,767 + -1.4 864,768 - +0.1 864,768 - -0.1 864,770 + -0.0 864,776 + +0.9 864,790 - +0.3 864,790 - +0.8 864,796 + -0.2 864,797 - +0.6 864,810 + +1.3 864,811 - -0.9 864,821 - -2.3 864,821 - -0.5 864,823 + +0.5 864,824 - -0.2 864,826 + -1.5 864,840 - +0.3 864,840 - +0.2 864,842 + -0.3 864,842 + -2.3 864,842 + +0.1 864,842 + +0.2 864,842 + +0.5 864,850 - +1.5 864,865 + +0.5 864,870 - +0.1 864,870 - -0.1 864,892 + -0.5 864,990 + +0.7 864,990 + -0.3 865,036 + -0.3 865,037 - -0.1 865,075 + lysS NOLOHH_04750 0.11 -0.8 865,139 - lysS NOLOHH_04750 0.15 +0.5 865,139 - lysS NOLOHH_04750 0.15 -0.6 865,162 - lysS NOLOHH_04750 0.17 +0.4 865,196 + lysS NOLOHH_04750 0.19 +0.2 865,196 + lysS NOLOHH_04750 0.19 +0.2 865,196 + lysS NOLOHH_04750 0.19 -0.5 865,197 - lysS NOLOHH_04750 0.19 +0.7 865,197 - lysS NOLOHH_04750 0.19 -0.0 865,211 - lysS NOLOHH_04750 0.20 +1.7 865,229 + lysS NOLOHH_04750 0.21 -0.2 865,231 + lysS NOLOHH_04750 0.21 +0.0 865,231 + lysS NOLOHH_04750 0.21 +0.7 865,325 - lysS NOLOHH_04750 0.28 +0.6 865,354 - lysS NOLOHH_04750 0.30 +0.0 865,354 - lysS NOLOHH_04750 0.30 -2.2 865,354 - lysS NOLOHH_04750 0.30 -1.1 865,362 + lysS NOLOHH_04750 0.30 -0.8 865,369 + lysS NOLOHH_04750 0.31 +0.4 865,438 + lysS NOLOHH_04750 0.35 +0.5 865,521 + lysS NOLOHH_04750 0.41 +0.0 865,522 - lysS NOLOHH_04750 0.41 +0.7 865,543 - lysS NOLOHH_04750 0.42 -0.5 865,543 - lysS NOLOHH_04750 0.42 -0.1 865,599 + lysS NOLOHH_04750 0.46 -0.4 865,603 + lysS NOLOHH_04750 0.46 -0.2 865,603 + lysS NOLOHH_04750 0.46 +0.6 865,603 + lysS NOLOHH_04750 0.46 +0.0 865,603 + lysS NOLOHH_04750 0.46 +0.6 865,603 + lysS NOLOHH_04750 0.46 +0.5 865,603 + lysS NOLOHH_04750 0.46 +0.4 865,603 + lysS NOLOHH_04750 0.46 +0.1 865,603 + lysS NOLOHH_04750 0.46 -0.7 865,603 + lysS NOLOHH_04750 0.46 +0.8 865,603 + lysS NOLOHH_04750 0.46 -0.3 865,604 - lysS NOLOHH_04750 0.46 -0.3 865,604 - lysS NOLOHH_04750 0.46 +0.6 865,604 - lysS NOLOHH_04750 0.46 -0.6 865,604 - lysS NOLOHH_04750 0.46 -0.1 865,604 - lysS NOLOHH_04750 0.46 +0.3 865,604 - lysS NOLOHH_04750 0.46 -0.9 865,607 + lysS NOLOHH_04750 0.46 +0.4 865,607 + lysS NOLOHH_04750 0.46 -1.1 865,608 - lysS NOLOHH_04750 0.46 +0.5 865,608 - lysS NOLOHH_04750 0.46 -0.5 865,608 - lysS NOLOHH_04750 0.46 +0.5 865,608 - lysS NOLOHH_04750 0.46 -2.2 865,608 - lysS NOLOHH_04750 0.46 -0.6 865,608 - lysS NOLOHH_04750 0.46 +0.1 865,608 - lysS NOLOHH_04750 0.46 +0.2 865,631 + lysS NOLOHH_04750 0.48 -0.3 865,631 + lysS NOLOHH_04750 0.48 -0.7 865,650 + lysS NOLOHH_04750 0.49 -0.3 865,684 + lysS NOLOHH_04750 0.51 -0.1 865,702 + lysS NOLOHH_04750 0.53 +0.3 865,702 + lysS NOLOHH_04750 0.53 -0.8 865,702 + lysS NOLOHH_04750 0.53 -0.1 865,745 + lysS NOLOHH_04750 0.55 -0.0 865,745 + lysS NOLOHH_04750 0.55 +0.2 865,745 + lysS NOLOHH_04750 0.55 -0.4 865,754 + lysS NOLOHH_04750 0.56 +0.1 865,755 - lysS NOLOHH_04750 0.56 +0.8 865,841 + lysS NOLOHH_04750 0.62 +0.1 865,842 - lysS NOLOHH_04750 0.62 +1.1 865,910 + lysS NOLOHH_04750 0.66 +0.2 865,976 - lysS NOLOHH_04750 0.71 -2.9 866,014 + lysS NOLOHH_04750 0.73 +0.2 866,014 + lysS NOLOHH_04750 0.73 -0.0 866,014 + lysS NOLOHH_04750 0.73 -0.9 866,015 - lysS NOLOHH_04750 0.73 +0.9 866,015 - lysS NOLOHH_04750 0.73 +0.0 866,015 - lysS NOLOHH_04750 0.73 +0.3 866,015 - lysS NOLOHH_04750 0.73 +0.8 866,015 - lysS NOLOHH_04750 0.73 +0.6 866,071 + lysS NOLOHH_04750 0.77 -1.1 866,113 + lysS NOLOHH_04750 0.80 +0.1 866,186 - lysS NOLOHH_04750 0.84 +1.3 866,273 + +0.1 866,274 - -0.1 866,274 - +0.2 866,285 + -0.5 866,303 + -0.2 866,304 - +0.6 866,354 - -0.5 866,375 - -0.5 866,375 - +0.5 866,378 - +0.4 866,433 - -0.4 866,533 + +0.1 866,534 - +0.9 866,621 + ghoT NOLOHH_04755 0.46 +0.3 866,622 - ghoT NOLOHH_04755 0.47 -0.8 866,622 - ghoT NOLOHH_04755 0.47 +0.7 866,664 + ghoT NOLOHH_04755 0.71 +0.0 866,822 + ghoS NOLOHH_04760 0.27 +0.4 866,940 - ghoS NOLOHH_04760 0.67 +0.0 866,944 + ghoS NOLOHH_04760 0.68 +0.2 866,944 + ghoS NOLOHH_04760 0.68 -0.0 866,980 + ghoS NOLOHH_04760 0.80 +0.3 867,010 + +0.4 867,010 + -1.3 867,011 - +0.7 867,011 - -1.8 867,051 - +0.2 867,110 + -0.9 867,117 + +0.7 867,285 - +0.1
Or see this region's nucleotide sequence