Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msrA and paeA are separated by 322 nucleotides paeA and ytfK are separated by 61 nucleotides ytfK and ytfJ are separated by 324 nucleotides
NOLOHH_04265: msrA - Peptide methionine sulfoxide reductase MsrA, at 776,209 to 776,847
msrA
NOLOHH_04280: paeA - Polyamine export protein, at 777,170 to 778,513
paeA
NOLOHH_04285: ytfK - Uncharacterized protein YtfK, at 778,575 to 778,781
ytfK
NOLOHH_04290: ytfJ - Uncharacterized protein YtfJ, at 779,106 to 779,663
ytfJ
Position (kb) 777
778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.216 kb on + strand at 776.217 kb on - strand at 776.217 kb on - strand at 776.265 kb on + strand at 776.265 kb on + strand at 776.265 kb on + strand at 776.283 kb on - strand, within msrA at 776.325 kb on - strand, within msrA at 776.325 kb on - strand, within msrA at 776.408 kb on - strand, within msrA at 776.426 kb on - strand, within msrA at 776.427 kb on + strand, within msrA at 776.428 kb on - strand, within msrA at 776.438 kb on - strand, within msrA at 776.510 kb on - strand, within msrA at 776.530 kb on + strand, within msrA at 776.530 kb on + strand, within msrA at 776.531 kb on - strand, within msrA at 776.549 kb on + strand, within msrA at 776.550 kb on - strand, within msrA at 776.627 kb on - strand, within msrA at 776.749 kb on + strand, within msrA at 776.749 kb on + strand, within msrA at 776.749 kb on + strand, within msrA at 776.749 kb on + strand, within msrA at 776.752 kb on + strand, within msrA at 776.752 kb on + strand, within msrA at 776.753 kb on - strand, within msrA at 776.753 kb on - strand, within msrA at 776.753 kb on - strand, within msrA at 776.776 kb on + strand, within msrA at 776.776 kb on + strand, within msrA at 776.776 kb on + strand, within msrA at 776.845 kb on + strand at 776.859 kb on + strand at 776.859 kb on + strand at 776.859 kb on + strand at 776.859 kb on + strand at 776.860 kb on - strand at 776.860 kb on - strand at 776.949 kb on + strand at 777.039 kb on + strand at 777.040 kb on - strand at 777.040 kb on - strand at 777.040 kb on - strand at 777.040 kb on - strand at 777.049 kb on + strand at 777.049 kb on + strand at 777.049 kb on + strand at 777.050 kb on - strand at 777.050 kb on - strand at 777.054 kb on + strand at 777.055 kb on - strand at 777.055 kb on - strand at 777.055 kb on - strand at 777.056 kb on + strand at 777.057 kb on - strand at 777.057 kb on - strand at 777.108 kb on + strand at 777.108 kb on + strand at 777.109 kb on - strand at 777.109 kb on - strand at 777.122 kb on + strand at 777.123 kb on - strand at 777.123 kb on - strand at 777.169 kb on + strand at 777.170 kb on - strand at 777.170 kb on - strand at 777.170 kb on - strand at 777.174 kb on + strand at 777.174 kb on + strand at 777.182 kb on - strand at 777.186 kb on + strand at 777.192 kb on + strand at 777.193 kb on - strand at 777.193 kb on - strand at 777.210 kb on + strand at 777.211 kb on - strand at 777.269 kb on - strand at 777.269 kb on - strand at 777.292 kb on + strand at 777.293 kb on - strand at 777.294 kb on + strand at 777.294 kb on + strand at 777.294 kb on + strand at 777.294 kb on + strand at 777.294 kb on + strand at 777.295 kb on - strand at 777.295 kb on - strand at 777.295 kb on - strand at 777.316 kb on + strand, within paeA at 777.316 kb on + strand, within paeA at 777.440 kb on + strand, within paeA at 777.440 kb on + strand, within paeA at 777.441 kb on - strand, within paeA at 777.442 kb on + strand, within paeA at 777.442 kb on + strand, within paeA at 777.442 kb on + strand, within paeA at 777.443 kb on - strand, within paeA at 777.443 kb on - strand, within paeA at 777.443 kb on - strand, within paeA at 777.443 kb on - strand, within paeA at 777.443 kb on - strand, within paeA at 777.443 kb on - strand, within paeA at 777.443 kb on - strand, within paeA at 777.526 kb on - strand, within paeA at 777.545 kb on - strand, within paeA at 777.574 kb on + strand, within paeA at 777.603 kb on - strand, within paeA at 777.648 kb on + strand, within paeA at 777.648 kb on + strand, within paeA at 777.648 kb on + strand, within paeA at 777.648 kb on + strand, within paeA at 777.648 kb on + strand, within paeA at 777.649 kb on - strand, within paeA at 777.678 kb on + strand, within paeA at 777.678 kb on + strand, within paeA at 777.679 kb on - strand, within paeA at 777.683 kb on - strand, within paeA at 777.683 kb on - strand, within paeA at 777.710 kb on + strand, within paeA at 777.710 kb on + strand, within paeA at 777.711 kb on - strand, within paeA at 777.711 kb on - strand, within paeA at 777.711 kb on - strand, within paeA at 777.711 kb on - strand, within paeA at 777.717 kb on + strand, within paeA at 777.747 kb on + strand, within paeA at 777.747 kb on + strand, within paeA at 777.751 kb on + strand, within paeA at 777.751 kb on + strand, within paeA at 777.877 kb on + strand, within paeA at 777.902 kb on - strand, within paeA at 777.902 kb on - strand, within paeA at 777.916 kb on + strand, within paeA at 777.925 kb on + strand, within paeA at 777.926 kb on - strand, within paeA at 777.945 kb on - strand, within paeA at 777.956 kb on - strand, within paeA at 778.042 kb on + strand, within paeA at 778.305 kb on - strand, within paeA at 778.305 kb on - strand, within paeA at 778.325 kb on - strand, within paeA at 778.333 kb on + strand, within paeA at 778.333 kb on + strand, within paeA at 778.333 kb on + strand, within paeA at 778.334 kb on - strand, within paeA at 778.334 kb on - strand, within paeA at 778.334 kb on - strand, within paeA at 778.334 kb on - strand, within paeA at 778.342 kb on + strand, within paeA at 778.342 kb on + strand, within paeA at 778.343 kb on - strand, within paeA at 778.343 kb on - strand, within paeA at 778.408 kb on + strand at 778.412 kb on + strand at 778.412 kb on + strand at 778.520 kb on + strand at 778.554 kb on + strand at 778.555 kb on - strand at 778.555 kb on - strand at 778.555 kb on - strand at 778.555 kb on - strand at 778.558 kb on - strand at 778.564 kb on + strand at 778.565 kb on - strand at 778.565 kb on - strand at 778.565 kb on - strand at 778.643 kb on + strand, within ytfK at 778.644 kb on - strand, within ytfK at 778.644 kb on - strand, within ytfK at 778.708 kb on + strand, within ytfK at 778.708 kb on + strand, within ytfK at 778.708 kb on + strand, within ytfK at 778.708 kb on + strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.709 kb on - strand, within ytfK at 778.711 kb on - strand, within ytfK at 778.739 kb on - strand, within ytfK at 778.762 kb on + strand at 778.762 kb on + strand at 778.763 kb on - strand at 778.763 kb on - strand at 778.763 kb on - strand at 778.785 kb on + strand at 778.785 kb on + strand at 778.786 kb on - strand at 778.800 kb on - strand at 778.802 kb on + strand at 778.833 kb on + strand at 778.833 kb on + strand at 778.834 kb on - strand at 778.834 kb on - strand at 778.834 kb on - strand at 778.834 kb on - strand at 778.836 kb on + strand at 778.866 kb on + strand at 778.867 kb on - strand at 778.868 kb on + strand at 778.869 kb on - strand at 778.869 kb on - strand at 778.869 kb on - strand at 778.897 kb on + strand at 778.898 kb on - strand at 778.913 kb on + strand at 778.937 kb on - strand at 778.966 kb on + strand at 778.966 kb on + strand at 778.967 kb on - strand at 778.967 kb on - strand at 778.967 kb on - strand at 778.967 kb on - strand at 778.967 kb on - strand at 778.967 kb on - strand at 778.967 kb on - strand at 778.967 kb on - strand at 778.983 kb on + strand at 779.039 kb on + strand at 779.039 kb on + strand at 779.040 kb on - strand at 779.046 kb on + strand at 779.046 kb on + strand at 779.046 kb on + strand at 779.046 kb on + strand at 779.047 kb on - strand at 779.047 kb on - strand at 779.047 kb on - strand at 779.047 kb on - strand at 779.052 kb on + strand at 779.091 kb on + strand at 779.092 kb on - strand at 779.092 kb on - strand at 779.092 kb on - strand at 779.246 kb on + strand, within ytfJ at 779.250 kb on + strand, within ytfJ at 779.303 kb on + strand, within ytfJ at 779.303 kb on + strand, within ytfJ at 779.303 kb on + strand, within ytfJ at 779.303 kb on + strand, within ytfJ at 779.303 kb on + strand, within ytfJ at 779.303 kb on + strand, within ytfJ at 779.304 kb on - strand, within ytfJ at 779.304 kb on - strand, within ytfJ at 779.357 kb on + strand, within ytfJ at 779.357 kb on + strand, within ytfJ at 779.358 kb on - strand, within ytfJ at 779.462 kb on + strand, within ytfJ at 779.463 kb on - strand, within ytfJ at 779.463 kb on - strand, within ytfJ at 779.463 kb on - strand, within ytfJ at 779.466 kb on - strand, within ytfJ at 779.492 kb on + strand, within ytfJ at 779.493 kb on - strand, within ytfJ at 779.493 kb on - strand, within ytfJ at 779.493 kb on - strand, within ytfJ
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 776,216 + +0.2 776,217 - -0.4 776,217 - +0.1 776,265 + +0.6 776,265 + -0.5 776,265 + -0.2 776,283 - msrA NOLOHH_04265 0.12 +0.4 776,325 - msrA NOLOHH_04265 0.18 +0.2 776,325 - msrA NOLOHH_04265 0.18 +0.7 776,408 - msrA NOLOHH_04265 0.31 -0.6 776,426 - msrA NOLOHH_04265 0.34 +1.0 776,427 + msrA NOLOHH_04265 0.34 +0.6 776,428 - msrA NOLOHH_04265 0.34 +1.2 776,438 - msrA NOLOHH_04265 0.36 +0.7 776,510 - msrA NOLOHH_04265 0.47 +0.2 776,530 + msrA NOLOHH_04265 0.50 +0.5 776,530 + msrA NOLOHH_04265 0.50 -3.5 776,531 - msrA NOLOHH_04265 0.50 +0.5 776,549 + msrA NOLOHH_04265 0.53 +0.5 776,550 - msrA NOLOHH_04265 0.53 -0.6 776,627 - msrA NOLOHH_04265 0.65 -0.4 776,749 + msrA NOLOHH_04265 0.85 -1.6 776,749 + msrA NOLOHH_04265 0.85 +0.3 776,749 + msrA NOLOHH_04265 0.85 -1.2 776,749 + msrA NOLOHH_04265 0.85 +1.2 776,752 + msrA NOLOHH_04265 0.85 -0.6 776,752 + msrA NOLOHH_04265 0.85 -0.4 776,753 - msrA NOLOHH_04265 0.85 -0.5 776,753 - msrA NOLOHH_04265 0.85 -0.3 776,753 - msrA NOLOHH_04265 0.85 -2.2 776,776 + msrA NOLOHH_04265 0.89 +1.1 776,776 + msrA NOLOHH_04265 0.89 -2.0 776,776 + msrA NOLOHH_04265 0.89 +0.1 776,845 + -0.5 776,859 + +0.1 776,859 + +1.1 776,859 + +0.6 776,859 + -1.5 776,860 - +0.8 776,860 - -0.1 776,949 + -0.3 777,039 + +0.2 777,040 - -1.0 777,040 - -0.0 777,040 - +0.5 777,040 - -0.3 777,049 + -0.4 777,049 + +0.7 777,049 + +0.4 777,050 - -0.1 777,050 - -1.2 777,054 + -0.8 777,055 - -0.6 777,055 - +0.2 777,055 - +0.3 777,056 + -2.4 777,057 - +1.9 777,057 - -0.3 777,108 + +0.9 777,108 + +0.1 777,109 - -1.2 777,109 - -2.8 777,122 + -0.4 777,123 - -0.6 777,123 - +0.3 777,169 + +0.3 777,170 - +0.8 777,170 - +0.5 777,170 - +0.4 777,174 + -0.3 777,174 + +0.7 777,182 - -0.3 777,186 + -0.6 777,192 + +0.1 777,193 - +0.1 777,193 - -0.7 777,210 + -0.4 777,211 - +0.2 777,269 - +0.2 777,269 - -1.4 777,292 + -2.4 777,293 - +0.4 777,294 + -0.4 777,294 + +0.2 777,294 + -0.0 777,294 + +0.9 777,294 + -0.5 777,295 - -0.5 777,295 - +0.7 777,295 - -0.7 777,316 + paeA NOLOHH_04280 0.11 +0.5 777,316 + paeA NOLOHH_04280 0.11 -0.4 777,440 + paeA NOLOHH_04280 0.20 +0.7 777,440 + paeA NOLOHH_04280 0.20 +0.8 777,441 - paeA NOLOHH_04280 0.20 +0.1 777,442 + paeA NOLOHH_04280 0.20 +0.2 777,442 + paeA NOLOHH_04280 0.20 -0.1 777,442 + paeA NOLOHH_04280 0.20 +0.1 777,443 - paeA NOLOHH_04280 0.20 +0.8 777,443 - paeA NOLOHH_04280 0.20 -0.1 777,443 - paeA NOLOHH_04280 0.20 -0.2 777,443 - paeA NOLOHH_04280 0.20 +0.2 777,443 - paeA NOLOHH_04280 0.20 +0.1 777,443 - paeA NOLOHH_04280 0.20 -0.6 777,443 - paeA NOLOHH_04280 0.20 +0.3 777,526 - paeA NOLOHH_04280 0.26 -0.4 777,545 - paeA NOLOHH_04280 0.28 -1.9 777,574 + paeA NOLOHH_04280 0.30 +0.6 777,603 - paeA NOLOHH_04280 0.32 -0.5 777,648 + paeA NOLOHH_04280 0.36 -0.3 777,648 + paeA NOLOHH_04280 0.36 +0.5 777,648 + paeA NOLOHH_04280 0.36 -0.9 777,648 + paeA NOLOHH_04280 0.36 +0.1 777,648 + paeA NOLOHH_04280 0.36 -0.2 777,649 - paeA NOLOHH_04280 0.36 -0.4 777,678 + paeA NOLOHH_04280 0.38 +0.4 777,678 + paeA NOLOHH_04280 0.38 -0.2 777,679 - paeA NOLOHH_04280 0.38 -0.5 777,683 - paeA NOLOHH_04280 0.38 -0.5 777,683 - paeA NOLOHH_04280 0.38 -0.2 777,710 + paeA NOLOHH_04280 0.40 +0.4 777,710 + paeA NOLOHH_04280 0.40 +1.3 777,711 - paeA NOLOHH_04280 0.40 -0.0 777,711 - paeA NOLOHH_04280 0.40 -0.1 777,711 - paeA NOLOHH_04280 0.40 -1.0 777,711 - paeA NOLOHH_04280 0.40 -1.1 777,717 + paeA NOLOHH_04280 0.41 -0.7 777,747 + paeA NOLOHH_04280 0.43 +0.3 777,747 + paeA NOLOHH_04280 0.43 +0.1 777,751 + paeA NOLOHH_04280 0.43 -0.0 777,751 + paeA NOLOHH_04280 0.43 +0.9 777,877 + paeA NOLOHH_04280 0.53 +0.5 777,902 - paeA NOLOHH_04280 0.54 +0.1 777,902 - paeA NOLOHH_04280 0.54 -2.6 777,916 + paeA NOLOHH_04280 0.56 -0.1 777,925 + paeA NOLOHH_04280 0.56 +0.7 777,926 - paeA NOLOHH_04280 0.56 +0.4 777,945 - paeA NOLOHH_04280 0.58 -0.1 777,956 - paeA NOLOHH_04280 0.58 -0.3 778,042 + paeA NOLOHH_04280 0.65 +0.1 778,305 - paeA NOLOHH_04280 0.84 +0.2 778,305 - paeA NOLOHH_04280 0.84 +0.5 778,325 - paeA NOLOHH_04280 0.86 +0.5 778,333 + paeA NOLOHH_04280 0.87 -0.1 778,333 + paeA NOLOHH_04280 0.87 +0.1 778,333 + paeA NOLOHH_04280 0.87 -0.3 778,334 - paeA NOLOHH_04280 0.87 -0.2 778,334 - paeA NOLOHH_04280 0.87 +0.2 778,334 - paeA NOLOHH_04280 0.87 -2.0 778,334 - paeA NOLOHH_04280 0.87 +0.3 778,342 + paeA NOLOHH_04280 0.87 +0.5 778,342 + paeA NOLOHH_04280 0.87 +0.7 778,343 - paeA NOLOHH_04280 0.87 -0.3 778,343 - paeA NOLOHH_04280 0.87 +1.6 778,408 + +0.7 778,412 + +1.2 778,412 + +0.2 778,520 + -0.4 778,554 + +1.3 778,555 - -0.8 778,555 - +0.2 778,555 - +0.3 778,555 - +0.4 778,558 - +0.1 778,564 + +0.5 778,565 - +0.6 778,565 - -0.4 778,565 - +0.5 778,643 + ytfK NOLOHH_04285 0.33 +1.2 778,644 - ytfK NOLOHH_04285 0.33 +0.5 778,644 - ytfK NOLOHH_04285 0.33 +0.3 778,708 + ytfK NOLOHH_04285 0.64 +0.7 778,708 + ytfK NOLOHH_04285 0.64 +0.5 778,708 + ytfK NOLOHH_04285 0.64 +0.3 778,708 + ytfK NOLOHH_04285 0.64 +0.2 778,709 - ytfK NOLOHH_04285 0.65 +0.3 778,709 - ytfK NOLOHH_04285 0.65 +1.2 778,709 - ytfK NOLOHH_04285 0.65 +0.7 778,709 - ytfK NOLOHH_04285 0.65 -0.2 778,709 - ytfK NOLOHH_04285 0.65 -0.4 778,709 - ytfK NOLOHH_04285 0.65 +0.4 778,709 - ytfK NOLOHH_04285 0.65 -0.1 778,709 - ytfK NOLOHH_04285 0.65 +0.3 778,709 - ytfK NOLOHH_04285 0.65 +0.6 778,709 - ytfK NOLOHH_04285 0.65 +1.0 778,709 - ytfK NOLOHH_04285 0.65 +0.5 778,711 - ytfK NOLOHH_04285 0.66 +0.3 778,739 - ytfK NOLOHH_04285 0.79 +0.3 778,762 + +0.6 778,762 + +0.6 778,763 - +0.5 778,763 - -0.0 778,763 - +1.5 778,785 + +2.5 778,785 + -0.0 778,786 - +1.0 778,800 - +0.2 778,802 + +0.4 778,833 + +0.6 778,833 + +0.5 778,834 - +0.4 778,834 - -0.3 778,834 - +0.8 778,834 - +0.4 778,836 + +0.4 778,866 + +1.2 778,867 - +0.7 778,868 + +0.5 778,869 - +0.6 778,869 - +0.7 778,869 - +0.2 778,897 + -1.0 778,898 - +0.9 778,913 + -1.0 778,937 - -0.9 778,966 + -1.0 778,966 + +1.1 778,967 - +1.1 778,967 - -0.2 778,967 - -0.1 778,967 - +1.0 778,967 - +0.4 778,967 - -1.0 778,967 - -3.3 778,967 - -0.2 778,983 + +0.2 779,039 + +0.2 779,039 + +0.4 779,040 - +0.2 779,046 + +0.1 779,046 + -0.1 779,046 + -0.4 779,046 + -0.4 779,047 - -0.6 779,047 - -1.2 779,047 - -2.7 779,047 - -1.1 779,052 + +0.3 779,091 + +0.5 779,092 - +0.7 779,092 - -0.3 779,092 - +0.1 779,246 + ytfJ NOLOHH_04290 0.25 -0.8 779,250 + ytfJ NOLOHH_04290 0.26 +0.6 779,303 + ytfJ NOLOHH_04290 0.35 -0.1 779,303 + ytfJ NOLOHH_04290 0.35 +0.1 779,303 + ytfJ NOLOHH_04290 0.35 -0.5 779,303 + ytfJ NOLOHH_04290 0.35 +0.4 779,303 + ytfJ NOLOHH_04290 0.35 +0.2 779,303 + ytfJ NOLOHH_04290 0.35 +0.2 779,304 - ytfJ NOLOHH_04290 0.35 +0.2 779,304 - ytfJ NOLOHH_04290 0.35 +0.0 779,357 + ytfJ NOLOHH_04290 0.45 +0.7 779,357 + ytfJ NOLOHH_04290 0.45 -1.4 779,358 - ytfJ NOLOHH_04290 0.45 -1.2 779,462 + ytfJ NOLOHH_04290 0.64 +0.0 779,463 - ytfJ NOLOHH_04290 0.64 -0.8 779,463 - ytfJ NOLOHH_04290 0.64 -0.3 779,463 - ytfJ NOLOHH_04290 0.64 +0.2 779,466 - ytfJ NOLOHH_04290 0.65 +0.2 779,492 + ytfJ NOLOHH_04290 0.69 -0.2 779,493 - ytfJ NOLOHH_04290 0.69 +0.8 779,493 - ytfJ NOLOHH_04290 0.69 -0.4 779,493 - ytfJ NOLOHH_04290 0.69 -1.9
Or see this region's nucleotide sequence