Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bolA and yajG are separated by 307 nucleotides yajG and ampG are separated by 43 nucleotides ampG and cyoA are separated by 460 nucleotides
NOLOHH_01280: bolA - transcriptional regulator BolA, at 149,144 to 149,458
bolA
NOLOHH_01285: yajG - Uncharacterized lipoprotein YajG, at 149,766 to 150,344
yajG
NOLOHH_01290: ampG - muropeptide MFS transporter AmpG, at 150,388 to 151,863
ampG
NOLOHH_01295: cyoA - cytochrome o ubiquinol oxidase subunit II, at 152,324 to 153,271
cyoA
Position (kb) 150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.397 kb on - strand, within bolA at 149.409 kb on - strand, within bolA at 149.442 kb on - strand at 149.454 kb on - strand at 149.504 kb on + strand at 149.508 kb on + strand at 149.508 kb on + strand at 149.508 kb on + strand at 149.509 kb on - strand at 149.522 kb on - strand at 149.541 kb on - strand at 149.584 kb on + strand at 149.594 kb on - strand at 149.640 kb on - strand at 149.652 kb on + strand at 149.653 kb on - strand at 149.653 kb on - strand at 149.674 kb on + strand at 149.675 kb on - strand at 149.713 kb on - strand at 149.744 kb on - strand at 149.744 kb on - strand at 149.744 kb on - strand at 149.792 kb on - strand at 149.804 kb on + strand at 149.858 kb on + strand, within yajG at 149.900 kb on - strand, within yajG at 150.042 kb on + strand, within yajG at 150.042 kb on + strand, within yajG at 150.043 kb on - strand, within yajG at 150.096 kb on + strand, within yajG at 150.096 kb on + strand, within yajG at 150.096 kb on + strand, within yajG at 150.097 kb on - strand, within yajG at 150.126 kb on + strand, within yajG at 150.126 kb on + strand, within yajG at 150.127 kb on - strand, within yajG at 150.128 kb on + strand, within yajG at 150.128 kb on + strand, within yajG at 150.128 kb on + strand, within yajG at 150.128 kb on + strand, within yajG at 150.129 kb on - strand, within yajG at 150.129 kb on - strand, within yajG at 150.210 kb on + strand, within yajG at 150.211 kb on - strand, within yajG at 150.211 kb on - strand, within yajG at 150.211 kb on - strand, within yajG at 150.293 kb on + strand at 150.293 kb on + strand at 150.343 kb on - strand at 150.401 kb on - strand at 150.492 kb on - strand at 150.492 kb on - strand at 150.562 kb on + strand, within ampG at 150.562 kb on + strand, within ampG at 150.562 kb on + strand, within ampG at 150.660 kb on - strand, within ampG at 150.662 kb on + strand, within ampG at 150.663 kb on - strand, within ampG at 150.763 kb on - strand, within ampG at 150.763 kb on - strand, within ampG at 150.848 kb on + strand, within ampG at 150.891 kb on + strand, within ampG at 150.892 kb on - strand, within ampG at 150.916 kb on + strand, within ampG at 150.916 kb on + strand, within ampG at 150.917 kb on - strand, within ampG at 150.917 kb on - strand, within ampG at 150.917 kb on - strand, within ampG at 150.917 kb on - strand, within ampG at 150.948 kb on + strand, within ampG at 150.948 kb on + strand, within ampG at 150.948 kb on + strand, within ampG at 150.949 kb on - strand, within ampG at 150.949 kb on - strand, within ampG at 151.053 kb on + strand, within ampG at 151.065 kb on + strand, within ampG at 151.066 kb on - strand, within ampG at 151.077 kb on + strand, within ampG at 151.087 kb on + strand, within ampG at 151.087 kb on + strand, within ampG at 151.087 kb on + strand, within ampG at 151.087 kb on + strand, within ampG at 151.087 kb on + strand, within ampG at 151.088 kb on - strand, within ampG at 151.089 kb on + strand, within ampG at 151.089 kb on + strand, within ampG at 151.089 kb on + strand, within ampG at 151.090 kb on - strand, within ampG at 151.166 kb on + strand, within ampG at 151.219 kb on + strand, within ampG at 151.219 kb on + strand, within ampG at 151.219 kb on + strand, within ampG at 151.220 kb on - strand, within ampG at 151.280 kb on + strand, within ampG at 151.281 kb on - strand, within ampG at 151.281 kb on - strand, within ampG at 151.327 kb on - strand, within ampG at 151.337 kb on - strand, within ampG at 151.422 kb on + strand, within ampG at 151.422 kb on + strand, within ampG at 151.423 kb on - strand, within ampG at 151.426 kb on - strand, within ampG at 151.475 kb on + strand, within ampG at 151.476 kb on - strand, within ampG at 151.486 kb on + strand, within ampG at 151.540 kb on + strand, within ampG at 151.540 kb on + strand, within ampG at 151.541 kb on - strand, within ampG at 151.541 kb on - strand, within ampG at 151.541 kb on - strand, within ampG at 151.544 kb on + strand, within ampG at 151.545 kb on - strand, within ampG at 151.633 kb on - strand, within ampG at 151.831 kb on + strand at 151.862 kb on - strand at 151.862 kb on - strand at 151.939 kb on - strand at 151.942 kb on - strand at 152.033 kb on - strand at 152.106 kb on - strand at 152.339 kb on + strand at 152.339 kb on + strand at 152.340 kb on - strand at 152.382 kb on + strand at 152.383 kb on - strand at 152.383 kb on - strand at 152.412 kb on + strand at 152.412 kb on + strand at 152.455 kb on - strand, within cyoA at 152.542 kb on + strand, within cyoA at 152.551 kb on + strand, within cyoA at 152.551 kb on + strand, within cyoA at 152.551 kb on + strand, within cyoA at 152.552 kb on - strand, within cyoA at 152.552 kb on - strand, within cyoA at 152.555 kb on + strand, within cyoA at 152.556 kb on - strand, within cyoA at 152.581 kb on + strand, within cyoA at 152.582 kb on - strand, within cyoA at 152.611 kb on + strand, within cyoA at 152.611 kb on + strand, within cyoA at 152.611 kb on + strand, within cyoA at 152.611 kb on + strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.616 kb on + strand, within cyoA at 152.616 kb on + strand, within cyoA at 152.616 kb on + strand, within cyoA at 152.617 kb on - strand, within cyoA at 152.704 kb on + strand, within cyoA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 149,397 - bolA NOLOHH_01280 0.80 +0.4 149,409 - bolA NOLOHH_01280 0.84 -0.8 149,442 - -0.7 149,454 - -0.1 149,504 + +0.6 149,508 + -0.1 149,508 + -1.3 149,508 + -0.8 149,509 - -0.0 149,522 - +0.3 149,541 - +0.3 149,584 + -0.2 149,594 - +1.2 149,640 - -0.3 149,652 + -3.2 149,653 - -0.6 149,653 - +1.3 149,674 + +0.2 149,675 - +0.7 149,713 - +0.8 149,744 - -1.4 149,744 - +1.7 149,744 - +0.3 149,792 - -0.8 149,804 + +0.5 149,858 + yajG NOLOHH_01285 0.16 +0.2 149,900 - yajG NOLOHH_01285 0.23 -2.3 150,042 + yajG NOLOHH_01285 0.48 +0.1 150,042 + yajG NOLOHH_01285 0.48 +0.2 150,043 - yajG NOLOHH_01285 0.48 -0.1 150,096 + yajG NOLOHH_01285 0.57 -0.5 150,096 + yajG NOLOHH_01285 0.57 -1.4 150,096 + yajG NOLOHH_01285 0.57 -0.9 150,097 - yajG NOLOHH_01285 0.57 -2.1 150,126 + yajG NOLOHH_01285 0.62 +0.6 150,126 + yajG NOLOHH_01285 0.62 -0.2 150,127 - yajG NOLOHH_01285 0.62 +0.2 150,128 + yajG NOLOHH_01285 0.63 -0.6 150,128 + yajG NOLOHH_01285 0.63 -1.1 150,128 + yajG NOLOHH_01285 0.63 -0.0 150,128 + yajG NOLOHH_01285 0.63 -0.1 150,129 - yajG NOLOHH_01285 0.63 -3.5 150,129 - yajG NOLOHH_01285 0.63 +0.1 150,210 + yajG NOLOHH_01285 0.77 -1.8 150,211 - yajG NOLOHH_01285 0.77 -0.7 150,211 - yajG NOLOHH_01285 0.77 -0.5 150,211 - yajG NOLOHH_01285 0.77 +0.0 150,293 + -0.3 150,293 + +0.3 150,343 - +0.4 150,401 - -0.3 150,492 - +0.6 150,492 - -0.5 150,562 + ampG NOLOHH_01290 0.12 +1.1 150,562 + ampG NOLOHH_01290 0.12 -0.8 150,562 + ampG NOLOHH_01290 0.12 -2.6 150,660 - ampG NOLOHH_01290 0.18 +0.6 150,662 + ampG NOLOHH_01290 0.19 -2.1 150,663 - ampG NOLOHH_01290 0.19 -1.0 150,763 - ampG NOLOHH_01290 0.25 -1.0 150,763 - ampG NOLOHH_01290 0.25 +0.7 150,848 + ampG NOLOHH_01290 0.31 +0.5 150,891 + ampG NOLOHH_01290 0.34 -0.5 150,892 - ampG NOLOHH_01290 0.34 +0.2 150,916 + ampG NOLOHH_01290 0.36 -0.3 150,916 + ampG NOLOHH_01290 0.36 +0.5 150,917 - ampG NOLOHH_01290 0.36 -0.8 150,917 - ampG NOLOHH_01290 0.36 -0.6 150,917 - ampG NOLOHH_01290 0.36 +0.1 150,917 - ampG NOLOHH_01290 0.36 -0.2 150,948 + ampG NOLOHH_01290 0.38 +0.5 150,948 + ampG NOLOHH_01290 0.38 +1.0 150,948 + ampG NOLOHH_01290 0.38 +0.2 150,949 - ampG NOLOHH_01290 0.38 -0.8 150,949 - ampG NOLOHH_01290 0.38 -0.1 151,053 + ampG NOLOHH_01290 0.45 -0.2 151,065 + ampG NOLOHH_01290 0.46 +1.6 151,066 - ampG NOLOHH_01290 0.46 -0.1 151,077 + ampG NOLOHH_01290 0.47 -0.3 151,087 + ampG NOLOHH_01290 0.47 -0.1 151,087 + ampG NOLOHH_01290 0.47 +1.3 151,087 + ampG NOLOHH_01290 0.47 +0.1 151,087 + ampG NOLOHH_01290 0.47 +0.2 151,087 + ampG NOLOHH_01290 0.47 +0.5 151,088 - ampG NOLOHH_01290 0.47 -0.1 151,089 + ampG NOLOHH_01290 0.47 -0.3 151,089 + ampG NOLOHH_01290 0.47 +0.9 151,089 + ampG NOLOHH_01290 0.47 -1.9 151,090 - ampG NOLOHH_01290 0.48 +1.1 151,166 + ampG NOLOHH_01290 0.53 +1.1 151,219 + ampG NOLOHH_01290 0.56 +0.4 151,219 + ampG NOLOHH_01290 0.56 -1.0 151,219 + ampG NOLOHH_01290 0.56 -0.0 151,220 - ampG NOLOHH_01290 0.56 +0.2 151,280 + ampG NOLOHH_01290 0.60 -0.2 151,281 - ampG NOLOHH_01290 0.61 +0.6 151,281 - ampG NOLOHH_01290 0.61 +0.3 151,327 - ampG NOLOHH_01290 0.64 -2.0 151,337 - ampG NOLOHH_01290 0.64 -0.9 151,422 + ampG NOLOHH_01290 0.70 -1.4 151,422 + ampG NOLOHH_01290 0.70 +1.0 151,423 - ampG NOLOHH_01290 0.70 -0.4 151,426 - ampG NOLOHH_01290 0.70 +0.2 151,475 + ampG NOLOHH_01290 0.74 -1.0 151,476 - ampG NOLOHH_01290 0.74 -2.0 151,486 + ampG NOLOHH_01290 0.74 -0.2 151,540 + ampG NOLOHH_01290 0.78 +0.1 151,540 + ampG NOLOHH_01290 0.78 +0.1 151,541 - ampG NOLOHH_01290 0.78 +1.1 151,541 - ampG NOLOHH_01290 0.78 +0.4 151,541 - ampG NOLOHH_01290 0.78 +0.2 151,544 + ampG NOLOHH_01290 0.78 +0.2 151,545 - ampG NOLOHH_01290 0.78 +0.3 151,633 - ampG NOLOHH_01290 0.84 -0.0 151,831 + +0.0 151,862 - -0.1 151,862 - -0.4 151,939 - -0.4 151,942 - +0.3 152,033 - -1.2 152,106 - -0.6 152,339 + -0.0 152,339 + -1.2 152,340 - +0.3 152,382 + +0.7 152,383 - +1.3 152,383 - +2.4 152,412 + -0.2 152,412 + -1.3 152,455 - cyoA NOLOHH_01295 0.14 -1.9 152,542 + cyoA NOLOHH_01295 0.23 +0.2 152,551 + cyoA NOLOHH_01295 0.24 -0.2 152,551 + cyoA NOLOHH_01295 0.24 +1.2 152,551 + cyoA NOLOHH_01295 0.24 +1.7 152,552 - cyoA NOLOHH_01295 0.24 +0.8 152,552 - cyoA NOLOHH_01295 0.24 -0.8 152,555 + cyoA NOLOHH_01295 0.24 +0.8 152,556 - cyoA NOLOHH_01295 0.24 -0.7 152,581 + cyoA NOLOHH_01295 0.27 +0.0 152,582 - cyoA NOLOHH_01295 0.27 +0.9 152,611 + cyoA NOLOHH_01295 0.30 -0.4 152,611 + cyoA NOLOHH_01295 0.30 +0.6 152,611 + cyoA NOLOHH_01295 0.30 -0.3 152,611 + cyoA NOLOHH_01295 0.30 +0.1 152,612 - cyoA NOLOHH_01295 0.30 +0.5 152,612 - cyoA NOLOHH_01295 0.30 -0.7 152,612 - cyoA NOLOHH_01295 0.30 -1.5 152,612 - cyoA NOLOHH_01295 0.30 -0.4 152,612 - cyoA NOLOHH_01295 0.30 -0.2 152,616 + cyoA NOLOHH_01295 0.31 -0.4 152,616 + cyoA NOLOHH_01295 0.31 +1.1 152,616 + cyoA NOLOHH_01295 0.31 +0.7 152,617 - cyoA NOLOHH_01295 0.31 +0.4 152,704 + cyoA NOLOHH_01295 0.40 +0.6
Or see this region's nucleotide sequence