Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20005

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttyrR and ycjF are separated by 147 nucleotidesycjF and ycjX overlap by 4 nucleotides NOLOHH_20000: tyrR - transcriptional regulator TyrR, at 3,935,579 to 3,937,120 tyrR NOLOHH_20005: ycjF - UPF0283 membrane protein YcjF, at 3,937,268 to 3,938,329 ycjF NOLOHH_20010: ycjX - Uncharacterized protein YcjX, at 3,938,326 to 3,939,723 ycjX Position (kb) 3937 3938 3939Strain fitness (log2 ratio) -2 -1 0 1at 3936.349 kb on - strand, within tyrRat 3936.410 kb on - strand, within tyrRat 3936.752 kb on - strand, within tyrRat 3937.003 kb on - strandat 3937.149 kb on + strandat 3937.153 kb on - strandat 3937.169 kb on - strandat 3937.270 kb on - strandat 3937.572 kb on + strand, within ycjFat 3937.733 kb on + strand, within ycjFat 3938.070 kb on - strand, within ycjFat 3938.151 kb on - strand, within ycjFat 3938.377 kb on - strandat 3938.611 kb on - strand, within ycjXat 3938.614 kb on - strand, within ycjXat 3938.677 kb on - strand, within ycjXat 3938.752 kb on + strand, within ycjXat 3938.821 kb on - strand, within ycjXat 3938.827 kb on - strand, within ycjXat 3938.827 kb on - strand, within ycjXat 3938.973 kb on + strand, within ycjXat 3938.974 kb on - strand, within ycjXat 3938.974 kb on - strand, within ycjXat 3938.974 kb on - strand, within ycjXat 3938.974 kb on - strand, within ycjXat 3939.115 kb on - strand, within ycjXat 3939.115 kb on - strand, within ycjXat 3939.275 kb on - strand, within ycjXat 3939.278 kb on + strand, within ycjXat 3939.279 kb on - strand, within ycjX

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,936,349 - tyrR NOLOHH_20000 0.50 -0.1
3,936,410 - tyrR NOLOHH_20000 0.54 -0.4
3,936,752 - tyrR NOLOHH_20000 0.76 -1.8
3,937,003 - +0.1
3,937,149 + +0.0
3,937,153 - +0.9
3,937,169 - -0.2
3,937,270 - -0.4
3,937,572 + ycjF NOLOHH_20005 0.29 -1.1
3,937,733 + ycjF NOLOHH_20005 0.44 -0.9
3,938,070 - ycjF NOLOHH_20005 0.76 -1.3
3,938,151 - ycjF NOLOHH_20005 0.83 -0.9
3,938,377 - +0.3
3,938,611 - ycjX NOLOHH_20010 0.20 -0.2
3,938,614 - ycjX NOLOHH_20010 0.21 +0.4
3,938,677 - ycjX NOLOHH_20010 0.25 -2.3
3,938,752 + ycjX NOLOHH_20010 0.30 -1.2
3,938,821 - ycjX NOLOHH_20010 0.35 +0.7
3,938,827 - ycjX NOLOHH_20010 0.36 +0.5
3,938,827 - ycjX NOLOHH_20010 0.36 +0.7
3,938,973 + ycjX NOLOHH_20010 0.46 +1.1
3,938,974 - ycjX NOLOHH_20010 0.46 +0.6
3,938,974 - ycjX NOLOHH_20010 0.46 -0.4
3,938,974 - ycjX NOLOHH_20010 0.46 -1.4
3,938,974 - ycjX NOLOHH_20010 0.46 +0.9
3,939,115 - ycjX NOLOHH_20010 0.56 +0.4
3,939,115 - ycjX NOLOHH_20010 0.56 +0.5
3,939,275 - ycjX NOLOHH_20010 0.68 -0.1
3,939,278 + ycjX NOLOHH_20010 0.68 +0.5
3,939,279 - ycjX NOLOHH_20010 0.68 +1.1

Or see this region's nucleotide sequence