Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tyrR and ycjF are separated by 147 nucleotides ycjF and ycjX overlap by 4 nucleotides
NOLOHH_20000: tyrR - transcriptional regulator TyrR, at 3,935,579 to 3,937,120
tyrR
NOLOHH_20005: ycjF - UPF0283 membrane protein YcjF, at 3,937,268 to 3,938,329
ycjF
NOLOHH_20010: ycjX - Uncharacterized protein YcjX, at 3,938,326 to 3,939,723
ycjX
Position (kb)
3937
3938
3939 Strain fitness (log2 ratio)
-2
-1
0
1 at 3936.349 kb on - strand, within tyrR at 3936.410 kb on - strand, within tyrR at 3936.752 kb on - strand, within tyrR at 3937.003 kb on - strand at 3937.149 kb on + strand at 3937.153 kb on - strand at 3937.169 kb on - strand at 3937.270 kb on - strand at 3937.572 kb on + strand, within ycjF at 3937.733 kb on + strand, within ycjF at 3938.070 kb on - strand, within ycjF at 3938.151 kb on - strand, within ycjF at 3938.377 kb on - strand at 3938.611 kb on - strand, within ycjX at 3938.614 kb on - strand, within ycjX at 3938.677 kb on - strand, within ycjX at 3938.752 kb on + strand, within ycjX at 3938.821 kb on - strand, within ycjX at 3938.827 kb on - strand, within ycjX at 3938.827 kb on - strand, within ycjX at 3938.973 kb on + strand, within ycjX at 3938.974 kb on - strand, within ycjX at 3938.974 kb on - strand, within ycjX at 3938.974 kb on - strand, within ycjX at 3938.974 kb on - strand, within ycjX at 3939.115 kb on - strand, within ycjX at 3939.115 kb on - strand, within ycjX at 3939.275 kb on - strand, within ycjX at 3939.278 kb on + strand, within ycjX at 3939.279 kb on - strand, within ycjX
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,936,349 - tyrR NOLOHH_20000 0.50 -0.1 3,936,410 - tyrR NOLOHH_20000 0.54 -0.4 3,936,752 - tyrR NOLOHH_20000 0.76 -1.8 3,937,003 - +0.1 3,937,149 + +0.0 3,937,153 - +0.9 3,937,169 - -0.2 3,937,270 - -0.4 3,937,572 + ycjF NOLOHH_20005 0.29 -1.1 3,937,733 + ycjF NOLOHH_20005 0.44 -0.9 3,938,070 - ycjF NOLOHH_20005 0.76 -1.3 3,938,151 - ycjF NOLOHH_20005 0.83 -0.9 3,938,377 - +0.3 3,938,611 - ycjX NOLOHH_20010 0.20 -0.2 3,938,614 - ycjX NOLOHH_20010 0.21 +0.4 3,938,677 - ycjX NOLOHH_20010 0.25 -2.3 3,938,752 + ycjX NOLOHH_20010 0.30 -1.2 3,938,821 - ycjX NOLOHH_20010 0.35 +0.7 3,938,827 - ycjX NOLOHH_20010 0.36 +0.5 3,938,827 - ycjX NOLOHH_20010 0.36 +0.7 3,938,973 + ycjX NOLOHH_20010 0.46 +1.1 3,938,974 - ycjX NOLOHH_20010 0.46 +0.6 3,938,974 - ycjX NOLOHH_20010 0.46 -0.4 3,938,974 - ycjX NOLOHH_20010 0.46 -1.4 3,938,974 - ycjX NOLOHH_20010 0.46 +0.9 3,939,115 - ycjX NOLOHH_20010 0.56 +0.4 3,939,115 - ycjX NOLOHH_20010 0.56 +0.5 3,939,275 - ycjX NOLOHH_20010 0.68 -0.1 3,939,278 + ycjX NOLOHH_20010 0.68 +0.5 3,939,279 - ycjX NOLOHH_20010 0.68 +1.1
Or see this region's nucleotide sequence