Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcA and cybB are separated by 244 nucleotides cybB and gap are separated by 188 nucleotides gap and aldA are separated by 41 nucleotides
NOLOHH_19360: ydcA - Uncharacterized protein YdcA, at 3,814,192 to 3,814,365
ydcA
NOLOHH_19370: cybB - cytochrome b561, at 3,814,610 to 3,815,140
cybB
NOLOHH_19375: gap - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,815,329 to 3,816,330
gap
NOLOHH_19380: aldA - aldehyde dehydrogenase, at 3,816,372 to 3,817,811
aldA
Position (kb)
3815
3816
3817 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3814.367 kb on + strand at 3814.392 kb on - strand at 3814.392 kb on - strand at 3814.411 kb on + strand at 3814.412 kb on - strand at 3814.412 kb on - strand at 3814.470 kb on + strand at 3814.663 kb on - strand, within cybB at 3814.748 kb on - strand, within cybB at 3814.748 kb on - strand, within cybB at 3814.748 kb on - strand, within cybB at 3814.825 kb on - strand, within cybB at 3814.825 kb on - strand, within cybB at 3814.825 kb on - strand, within cybB at 3814.926 kb on - strand, within cybB at 3814.926 kb on - strand, within cybB at 3814.926 kb on - strand, within cybB at 3814.926 kb on - strand, within cybB at 3815.909 kb on + strand, within gap at 3816.297 kb on + strand at 3816.367 kb on - strand at 3816.386 kb on - strand at 3816.407 kb on - strand at 3816.407 kb on - strand at 3816.453 kb on - strand at 3816.480 kb on - strand at 3816.566 kb on - strand, within aldA at 3816.722 kb on - strand, within aldA at 3816.920 kb on - strand, within aldA at 3816.975 kb on - strand, within aldA at 3817.134 kb on - strand, within aldA at 3817.134 kb on - strand, within aldA at 3817.134 kb on - strand, within aldA at 3817.198 kb on - strand, within aldA at 3817.198 kb on - strand, within aldA at 3817.271 kb on + strand, within aldA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,814,367 + -2.0 3,814,392 - -0.9 3,814,392 - +0.8 3,814,411 + -0.6 3,814,412 - -4.0 3,814,412 - +0.2 3,814,470 + +0.7 3,814,663 - cybB NOLOHH_19370 0.10 -0.5 3,814,748 - cybB NOLOHH_19370 0.26 -0.3 3,814,748 - cybB NOLOHH_19370 0.26 -0.3 3,814,748 - cybB NOLOHH_19370 0.26 -0.3 3,814,825 - cybB NOLOHH_19370 0.40 -0.5 3,814,825 - cybB NOLOHH_19370 0.40 +0.1 3,814,825 - cybB NOLOHH_19370 0.40 +1.0 3,814,926 - cybB NOLOHH_19370 0.60 +1.6 3,814,926 - cybB NOLOHH_19370 0.60 +1.0 3,814,926 - cybB NOLOHH_19370 0.60 -1.1 3,814,926 - cybB NOLOHH_19370 0.60 +0.0 3,815,909 + gap NOLOHH_19375 0.58 +0.2 3,816,297 + -3.7 3,816,367 - -0.4 3,816,386 - +1.4 3,816,407 - -2.1 3,816,407 - +0.5 3,816,453 - -3.1 3,816,480 - -0.5 3,816,566 - aldA NOLOHH_19380 0.13 -1.3 3,816,722 - aldA NOLOHH_19380 0.24 +0.4 3,816,920 - aldA NOLOHH_19380 0.38 +2.3 3,816,975 - aldA NOLOHH_19380 0.42 +0.5 3,817,134 - aldA NOLOHH_19380 0.53 -0.5 3,817,134 - aldA NOLOHH_19380 0.53 -2.1 3,817,134 - aldA NOLOHH_19380 0.53 +0.2 3,817,198 - aldA NOLOHH_19380 0.57 +3.4 3,817,198 - aldA NOLOHH_19380 0.57 -0.3 3,817,271 + aldA NOLOHH_19380 0.62 -0.4
Or see this region's nucleotide sequence