Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15230

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmlrA and btsS are separated by 221 nucleotidesbtsS and btsR overlap by 4 nucleotidesbtsR and yehS are separated by 46 nucleotides NOLOHH_15225: mlrA - HTH-type transcriptional regulator MlrA, at 2,988,542 to 2,989,273 mlrA NOLOHH_15230: btsS - two-component regulatory system sensor histidine kinase BtsS, at 2,989,495 to 2,991,180 btsS NOLOHH_15235: btsR - two-component system response regulator BtsR, at 2,991,177 to 2,991,896 btsR NOLOHH_15240: yehS - Uncharacterized protein YehS, at 2,991,943 to 2,992,413 yehS Position (kb) 2989 2990 2991 2992Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2988.519 kb on - strandat 2988.643 kb on + strand, within mlrAat 2988.644 kb on - strand, within mlrAat 2988.668 kb on + strand, within mlrAat 2988.669 kb on - strand, within mlrAat 2988.828 kb on + strand, within mlrAat 2988.829 kb on - strand, within mlrAat 2988.911 kb on - strand, within mlrAat 2989.232 kb on - strandat 2989.232 kb on - strandat 2989.264 kb on - strandat 2989.310 kb on + strandat 2989.358 kb on + strandat 2989.358 kb on + strandat 2989.359 kb on - strandat 2989.359 kb on - strandat 2989.457 kb on + strandat 2989.457 kb on + strandat 2989.458 kb on - strandat 2989.498 kb on + strandat 2989.580 kb on + strandat 2989.621 kb on - strandat 2989.784 kb on + strand, within btsSat 2989.784 kb on + strand, within btsSat 2989.817 kb on + strand, within btsSat 2989.899 kb on + strand, within btsSat 2989.900 kb on - strand, within btsSat 2989.987 kb on + strand, within btsSat 2990.016 kb on + strand, within btsSat 2990.017 kb on - strand, within btsSat 2990.070 kb on + strand, within btsSat 2990.071 kb on - strand, within btsSat 2990.072 kb on + strand, within btsSat 2990.072 kb on + strand, within btsSat 2990.212 kb on + strand, within btsSat 2990.323 kb on + strand, within btsSat 2990.324 kb on - strand, within btsSat 2990.480 kb on - strand, within btsSat 2990.510 kb on + strand, within btsSat 2990.717 kb on - strand, within btsSat 2990.767 kb on - strand, within btsSat 2990.922 kb on + strand, within btsSat 2990.923 kb on - strand, within btsSat 2991.132 kb on + strandat 2991.132 kb on + strandat 2991.136 kb on + strandat 2991.136 kb on + strandat 2991.182 kb on + strandat 2991.182 kb on + strandat 2991.190 kb on + strandat 2991.190 kb on + strandat 2991.309 kb on - strand, within btsRat 2991.437 kb on + strand, within btsRat 2991.440 kb on + strand, within btsRat 2991.612 kb on + strand, within btsRat 2991.666 kb on + strand, within btsRat 2991.666 kb on + strand, within btsRat 2991.666 kb on + strand, within btsRat 2991.712 kb on + strand, within btsRat 2991.712 kb on + strand, within btsRat 2991.712 kb on + strand, within btsRat 2991.874 kb on + strandat 2991.947 kb on + strandat 2991.951 kb on + strandat 2992.064 kb on + strand, within yehSat 2992.064 kb on + strand, within yehS

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
2,988,519 - +0.4
2,988,643 + mlrA NOLOHH_15225 0.14 +0.1
2,988,644 - mlrA NOLOHH_15225 0.14 -1.1
2,988,668 + mlrA NOLOHH_15225 0.17 -0.4
2,988,669 - mlrA NOLOHH_15225 0.17 +0.3
2,988,828 + mlrA NOLOHH_15225 0.39 +0.6
2,988,829 - mlrA NOLOHH_15225 0.39 +0.0
2,988,911 - mlrA NOLOHH_15225 0.50 -3.6
2,989,232 - -1.4
2,989,232 - +0.1
2,989,264 - -1.3
2,989,310 + +0.9
2,989,358 + -2.9
2,989,358 + -1.0
2,989,359 - +1.1
2,989,359 - +0.0
2,989,457 + +0.8
2,989,457 + -1.2
2,989,458 - +1.4
2,989,498 + +0.1
2,989,580 + +0.1
2,989,621 - +0.2
2,989,784 + btsS NOLOHH_15230 0.17 +0.7
2,989,784 + btsS NOLOHH_15230 0.17 -0.3
2,989,817 + btsS NOLOHH_15230 0.19 +0.2
2,989,899 + btsS NOLOHH_15230 0.24 -0.2
2,989,900 - btsS NOLOHH_15230 0.24 +0.5
2,989,987 + btsS NOLOHH_15230 0.29 +0.1
2,990,016 + btsS NOLOHH_15230 0.31 +0.3
2,990,017 - btsS NOLOHH_15230 0.31 -1.9
2,990,070 + btsS NOLOHH_15230 0.34 +0.9
2,990,071 - btsS NOLOHH_15230 0.34 +0.3
2,990,072 + btsS NOLOHH_15230 0.34 +1.4
2,990,072 + btsS NOLOHH_15230 0.34 -2.5
2,990,212 + btsS NOLOHH_15230 0.43 +2.6
2,990,323 + btsS NOLOHH_15230 0.49 -0.8
2,990,324 - btsS NOLOHH_15230 0.49 -1.4
2,990,480 - btsS NOLOHH_15230 0.58 -2.7
2,990,510 + btsS NOLOHH_15230 0.60 +0.4
2,990,717 - btsS NOLOHH_15230 0.72 -2.2
2,990,767 - btsS NOLOHH_15230 0.75 -0.7
2,990,922 + btsS NOLOHH_15230 0.85 -0.2
2,990,923 - btsS NOLOHH_15230 0.85 -0.3
2,991,132 + -3.1
2,991,132 + -0.6
2,991,136 + -0.8
2,991,136 + +0.1
2,991,182 + +1.1
2,991,182 + -2.4
2,991,190 + -1.0
2,991,190 + -0.0
2,991,309 - btsR NOLOHH_15235 0.18 -2.5
2,991,437 + btsR NOLOHH_15235 0.36 -0.3
2,991,440 + btsR NOLOHH_15235 0.37 -1.1
2,991,612 + btsR NOLOHH_15235 0.60 +0.1
2,991,666 + btsR NOLOHH_15235 0.68 -0.8
2,991,666 + btsR NOLOHH_15235 0.68 -0.3
2,991,666 + btsR NOLOHH_15235 0.68 -2.7
2,991,712 + btsR NOLOHH_15235 0.74 +0.7
2,991,712 + btsR NOLOHH_15235 0.74 +0.2
2,991,712 + btsR NOLOHH_15235 0.74 +0.1
2,991,874 + -0.2
2,991,947 + +1.3
2,991,951 + +0.7
2,992,064 + yehS NOLOHH_15240 0.26 +1.1
2,992,064 + yehS NOLOHH_15240 0.26 +0.2

Or see this region's nucleotide sequence