Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14125

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntemrK and emrY overlap by 1 nucleotidesemrY and dsdA are separated by 107 nucleotides NOLOHH_14120: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 2,745,711 to 2,746,874 emrK NOLOHH_14125: emrY - multidrug efflux MFS transporter permease subunit EmrY, at 2,746,874 to 2,748,412 emrY NOLOHH_14130: dsdA - D-serine ammonia-lyase, at 2,748,520 to 2,749,848 dsdA Position (kb) 2746 2747 2748 2749Strain fitness (log2 ratio) -3 -2 -1 0 1at 2745.920 kb on + strand, within emrKat 2746.365 kb on - strand, within emrKat 2746.478 kb on + strand, within emrKat 2746.509 kb on - strand, within emrKat 2746.722 kb on - strand, within emrKat 2746.808 kb on - strandat 2747.004 kb on + strandat 2747.065 kb on - strand, within emrYat 2747.310 kb on + strand, within emrYat 2747.448 kb on + strand, within emrYat 2747.448 kb on + strand, within emrYat 2747.864 kb on + strand, within emrYat 2747.916 kb on - strand, within emrYat 2748.172 kb on + strand, within emrYat 2748.242 kb on + strand, within emrYat 2748.242 kb on + strand, within emrYat 2748.245 kb on + strand, within emrYat 2748.307 kb on + strandat 2748.349 kb on + strandat 2748.416 kb on + strandat 2748.432 kb on + strandat 2748.439 kb on + strandat 2748.454 kb on + strandat 2748.455 kb on - strandat 2748.455 kb on - strandat 2748.455 kb on - strandat 2748.600 kb on + strandat 2748.744 kb on - strand, within dsdAat 2748.744 kb on - strand, within dsdAat 2748.768 kb on - strand, within dsdAat 2748.768 kb on - strand, within dsdAat 2748.768 kb on - strand, within dsdAat 2748.890 kb on - strand, within dsdAat 2748.907 kb on + strand, within dsdAat 2748.908 kb on - strand, within dsdAat 2748.915 kb on + strand, within dsdAat 2748.915 kb on + strand, within dsdAat 2748.915 kb on + strand, within dsdAat 2748.915 kb on + strand, within dsdAat 2748.915 kb on + strand, within dsdAat 2748.915 kb on + strand, within dsdAat 2748.916 kb on - strand, within dsdAat 2748.916 kb on - strand, within dsdAat 2748.916 kb on - strand, within dsdAat 2748.916 kb on - strand, within dsdAat 2748.916 kb on - strand, within dsdAat 2748.916 kb on - strand, within dsdAat 2749.177 kb on - strand, within dsdAat 2749.203 kb on - strand, within dsdAat 2749.281 kb on + strand, within dsdAat 2749.281 kb on + strand, within dsdAat 2749.282 kb on - strand, within dsdAat 2749.282 kb on - strand, within dsdAat 2749.282 kb on - strand, within dsdAat 2749.296 kb on + strand, within dsdAat 2749.317 kb on + strand, within dsdA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,745,920 + emrK NOLOHH_14120 0.18 +0.5
2,746,365 - emrK NOLOHH_14120 0.56 +0.6
2,746,478 + emrK NOLOHH_14120 0.66 -0.4
2,746,509 - emrK NOLOHH_14120 0.69 +0.9
2,746,722 - emrK NOLOHH_14120 0.87 +0.8
2,746,808 - +0.3
2,747,004 + +0.5
2,747,065 - emrY NOLOHH_14125 0.12 -2.9
2,747,310 + emrY NOLOHH_14125 0.28 +0.9
2,747,448 + emrY NOLOHH_14125 0.37 +0.6
2,747,448 + emrY NOLOHH_14125 0.37 +1.2
2,747,864 + emrY NOLOHH_14125 0.64 -1.3
2,747,916 - emrY NOLOHH_14125 0.68 -0.1
2,748,172 + emrY NOLOHH_14125 0.84 -0.3
2,748,242 + emrY NOLOHH_14125 0.89 +1.7
2,748,242 + emrY NOLOHH_14125 0.89 -0.3
2,748,245 + emrY NOLOHH_14125 0.89 +0.2
2,748,307 + -2.4
2,748,349 + +0.6
2,748,416 + +0.2
2,748,432 + +0.1
2,748,439 + -0.8
2,748,454 + +0.5
2,748,455 - +0.5
2,748,455 - +0.7
2,748,455 - +0.1
2,748,600 + +0.5
2,748,744 - dsdA NOLOHH_14130 0.17 +0.4
2,748,744 - dsdA NOLOHH_14130 0.17 +0.9
2,748,768 - dsdA NOLOHH_14130 0.19 -0.6
2,748,768 - dsdA NOLOHH_14130 0.19 +0.6
2,748,768 - dsdA NOLOHH_14130 0.19 +0.7
2,748,890 - dsdA NOLOHH_14130 0.28 +0.5
2,748,907 + dsdA NOLOHH_14130 0.29 +0.3
2,748,908 - dsdA NOLOHH_14130 0.29 -0.0
2,748,915 + dsdA NOLOHH_14130 0.30 +0.5
2,748,915 + dsdA NOLOHH_14130 0.30 +0.9
2,748,915 + dsdA NOLOHH_14130 0.30 +0.6
2,748,915 + dsdA NOLOHH_14130 0.30 -0.4
2,748,915 + dsdA NOLOHH_14130 0.30 -1.7
2,748,915 + dsdA NOLOHH_14130 0.30 -0.1
2,748,916 - dsdA NOLOHH_14130 0.30 -2.2
2,748,916 - dsdA NOLOHH_14130 0.30 +0.1
2,748,916 - dsdA NOLOHH_14130 0.30 +0.5
2,748,916 - dsdA NOLOHH_14130 0.30 -0.3
2,748,916 - dsdA NOLOHH_14130 0.30 -0.6
2,748,916 - dsdA NOLOHH_14130 0.30 +0.1
2,749,177 - dsdA NOLOHH_14130 0.49 -3.4
2,749,203 - dsdA NOLOHH_14130 0.51 +0.0
2,749,281 + dsdA NOLOHH_14130 0.57 -2.9
2,749,281 + dsdA NOLOHH_14130 0.57 -0.1
2,749,282 - dsdA NOLOHH_14130 0.57 -0.6
2,749,282 - dsdA NOLOHH_14130 0.57 +0.7
2,749,282 - dsdA NOLOHH_14130 0.57 -1.0
2,749,296 + dsdA NOLOHH_14130 0.58 -1.2
2,749,317 + dsdA NOLOHH_14130 0.60 +0.4

Or see this region's nucleotide sequence