Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaaA and yaaX are separated by 152 nucleotides yaaX and thrC are separated by 213 nucleotides thrC and thrB are separated by 0 nucleotides thrB and thrA are separated by 1 nucleotides
NOLOHH_03420: yaaA - peroxide stress protein YaaA, at 603,177 to 603,953
yaaA
NOLOHH_03425: yaaX - Uncharacterized protein YaaX, at 604,106 to 604,402
yaaX
NOLOHH_03430: thrC - threonine synthase, at 604,616 to 605,902
thrC
NOLOHH_03435: thrB - homoserine kinase, at 605,903 to 606,835
thrB
NOLOHH_03440: thrA - bifunctional aspartate kinase/homoserine dehydrogenase I, at 606,837 to 609,299
thrA
Position (kb) 604
605
606 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 603.623 kb on + strand, within yaaA at 603.681 kb on - strand, within yaaA at 603.699 kb on + strand, within yaaA at 603.699 kb on + strand, within yaaA at 603.699 kb on + strand, within yaaA at 603.700 kb on - strand, within yaaA at 603.700 kb on - strand, within yaaA at 603.704 kb on + strand, within yaaA at 603.784 kb on + strand, within yaaA at 603.785 kb on - strand, within yaaA at 603.795 kb on + strand, within yaaA at 603.795 kb on + strand, within yaaA at 603.796 kb on - strand, within yaaA at 603.796 kb on - strand, within yaaA at 603.796 kb on - strand, within yaaA at 603.796 kb on - strand, within yaaA at 603.830 kb on + strand, within yaaA at 603.875 kb on + strand, within yaaA at 603.876 kb on - strand at 603.888 kb on + strand at 603.951 kb on + strand at 603.952 kb on - strand at 603.959 kb on + strand at 604.019 kb on + strand at 604.021 kb on + strand at 604.107 kb on + strand at 604.108 kb on - strand at 604.108 kb on - strand at 604.221 kb on + strand, within yaaX at 604.270 kb on - strand, within yaaX at 604.272 kb on + strand, within yaaX at 604.273 kb on - strand, within yaaX at 604.273 kb on - strand, within yaaX at 604.273 kb on - strand, within yaaX at 604.282 kb on + strand, within yaaX at 604.301 kb on + strand, within yaaX at 604.324 kb on + strand, within yaaX at 604.325 kb on - strand, within yaaX at 604.384 kb on + strand at 604.384 kb on + strand at 604.385 kb on - strand at 604.385 kb on - strand at 604.408 kb on - strand at 604.416 kb on + strand at 604.417 kb on - strand at 604.496 kb on - strand at 604.577 kb on + strand at 604.578 kb on - strand at 604.604 kb on - strand at 604.670 kb on - strand at 604.670 kb on - strand at 604.670 kb on - strand at 604.685 kb on + strand at 604.685 kb on + strand at 604.685 kb on + strand at 604.685 kb on + strand at 604.794 kb on + strand, within thrC at 604.794 kb on + strand, within thrC at 604.830 kb on + strand, within thrC at 604.875 kb on - strand, within thrC at 604.920 kb on + strand, within thrC at 605.226 kb on + strand, within thrC at 605.227 kb on - strand, within thrC at 605.269 kb on + strand, within thrC at 605.389 kb on + strand, within thrC at 605.389 kb on + strand, within thrC at 605.390 kb on - strand, within thrC at 605.390 kb on - strand, within thrC at 605.390 kb on - strand, within thrC at 605.564 kb on - strand, within thrC at 605.585 kb on - strand, within thrC at 605.847 kb on - strand at 605.893 kb on - strand at 605.904 kb on + strand at 605.905 kb on - strand at 605.905 kb on - strand at 605.916 kb on - strand at 605.947 kb on + strand at 605.947 kb on + strand at 605.947 kb on + strand at 605.976 kb on + strand at 605.976 kb on + strand at 605.976 kb on + strand at 605.976 kb on + strand at 605.976 kb on + strand at 605.976 kb on + strand at 605.977 kb on - strand at 606.029 kb on + strand, within thrB at 606.029 kb on + strand, within thrB at 606.029 kb on + strand, within thrB at 606.030 kb on - strand, within thrB at 606.030 kb on - strand, within thrB at 606.263 kb on + strand, within thrB at 606.295 kb on + strand, within thrB at 606.549 kb on - strand, within thrB at 606.568 kb on + strand, within thrB at 606.640 kb on - strand, within thrB at 606.731 kb on + strand, within thrB at 606.731 kb on + strand, within thrB at 606.731 kb on + strand, within thrB at 606.731 kb on + strand, within thrB at 606.732 kb on - strand, within thrB at 606.732 kb on - strand, within thrB at 606.732 kb on - strand, within thrB at 606.732 kb on - strand, within thrB at 606.732 kb on - strand, within thrB at 606.732 kb on - strand, within thrB at 606.732 kb on - strand, within thrB at 606.732 kb on - strand, within thrB at 606.732 kb on - strand, within thrB at 606.799 kb on + strand at 606.829 kb on + strand at 606.846 kb on + strand at 606.863 kb on + strand at 606.867 kb on + strand at 606.868 kb on - strand at 606.868 kb on - strand at 606.868 kb on - strand at 606.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 603,623 + yaaA NOLOHH_03420 0.57 -0.3 603,681 - yaaA NOLOHH_03420 0.65 -1.9 603,699 + yaaA NOLOHH_03420 0.67 +0.3 603,699 + yaaA NOLOHH_03420 0.67 -0.3 603,699 + yaaA NOLOHH_03420 0.67 +0.9 603,700 - yaaA NOLOHH_03420 0.67 -0.2 603,700 - yaaA NOLOHH_03420 0.67 +1.5 603,704 + yaaA NOLOHH_03420 0.68 +0.0 603,784 + yaaA NOLOHH_03420 0.78 +1.2 603,785 - yaaA NOLOHH_03420 0.78 +1.1 603,795 + yaaA NOLOHH_03420 0.80 +0.4 603,795 + yaaA NOLOHH_03420 0.80 -0.1 603,796 - yaaA NOLOHH_03420 0.80 +0.4 603,796 - yaaA NOLOHH_03420 0.80 +1.7 603,796 - yaaA NOLOHH_03420 0.80 -0.8 603,796 - yaaA NOLOHH_03420 0.80 +0.0 603,830 + yaaA NOLOHH_03420 0.84 +0.0 603,875 + yaaA NOLOHH_03420 0.90 -0.6 603,876 - +0.9 603,888 + +0.1 603,951 + +0.7 603,952 - -0.6 603,959 + +0.2 604,019 + -0.1 604,021 + -0.4 604,107 + +0.7 604,108 - +0.7 604,108 - +0.1 604,221 + yaaX NOLOHH_03425 0.39 +0.0 604,270 - yaaX NOLOHH_03425 0.55 -0.1 604,272 + yaaX NOLOHH_03425 0.56 +0.3 604,273 - yaaX NOLOHH_03425 0.56 -0.8 604,273 - yaaX NOLOHH_03425 0.56 +0.4 604,273 - yaaX NOLOHH_03425 0.56 -1.5 604,282 + yaaX NOLOHH_03425 0.59 -0.2 604,301 + yaaX NOLOHH_03425 0.66 +0.4 604,324 + yaaX NOLOHH_03425 0.73 -0.8 604,325 - yaaX NOLOHH_03425 0.74 +0.3 604,384 + +0.2 604,384 + -3.0 604,385 - -1.1 604,385 - +1.7 604,408 - -0.7 604,416 + +0.3 604,417 - +0.4 604,496 - -0.0 604,577 + -0.1 604,578 - +0.8 604,604 - -0.8 604,670 - -2.9 604,670 - -3.2 604,670 - -5.3 604,685 + -4.8 604,685 + -5.7 604,685 + -4.5 604,685 + -2.9 604,794 + thrC NOLOHH_03430 0.14 -3.4 604,794 + thrC NOLOHH_03430 0.14 -3.9 604,830 + thrC NOLOHH_03430 0.17 -5.3 604,875 - thrC NOLOHH_03430 0.20 -5.4 604,920 + thrC NOLOHH_03430 0.24 -4.9 605,226 + thrC NOLOHH_03430 0.47 -3.9 605,227 - thrC NOLOHH_03430 0.47 -3.2 605,269 + thrC NOLOHH_03430 0.51 -5.5 605,389 + thrC NOLOHH_03430 0.60 -3.8 605,389 + thrC NOLOHH_03430 0.60 -2.6 605,390 - thrC NOLOHH_03430 0.60 -4.5 605,390 - thrC NOLOHH_03430 0.60 -7.0 605,390 - thrC NOLOHH_03430 0.60 -4.1 605,564 - thrC NOLOHH_03430 0.74 -5.5 605,585 - thrC NOLOHH_03430 0.75 -4.1 605,847 - -4.2 605,893 - -5.6 605,904 + -2.7 605,905 - -3.3 605,905 - -2.8 605,916 - +0.1 605,947 + -4.4 605,947 + -6.4 605,947 + -5.5 605,976 + -4.5 605,976 + -3.1 605,976 + -2.4 605,976 + -4.9 605,976 + -4.1 605,976 + -3.2 605,977 - -2.7 606,029 + thrB NOLOHH_03435 0.14 -3.9 606,029 + thrB NOLOHH_03435 0.14 -2.9 606,029 + thrB NOLOHH_03435 0.14 -5.2 606,030 - thrB NOLOHH_03435 0.14 -2.4 606,030 - thrB NOLOHH_03435 0.14 -5.2 606,263 + thrB NOLOHH_03435 0.39 -6.4 606,295 + thrB NOLOHH_03435 0.42 -2.9 606,549 - thrB NOLOHH_03435 0.69 -5.1 606,568 + thrB NOLOHH_03435 0.71 -5.6 606,640 - thrB NOLOHH_03435 0.79 -1.6 606,731 + thrB NOLOHH_03435 0.89 -4.5 606,731 + thrB NOLOHH_03435 0.89 -3.9 606,731 + thrB NOLOHH_03435 0.89 -3.8 606,731 + thrB NOLOHH_03435 0.89 -5.3 606,732 - thrB NOLOHH_03435 0.89 -4.1 606,732 - thrB NOLOHH_03435 0.89 -3.8 606,732 - thrB NOLOHH_03435 0.89 -3.0 606,732 - thrB NOLOHH_03435 0.89 -5.1 606,732 - thrB NOLOHH_03435 0.89 -3.7 606,732 - thrB NOLOHH_03435 0.89 -4.4 606,732 - thrB NOLOHH_03435 0.89 -5.1 606,732 - thrB NOLOHH_03435 0.89 -3.8 606,732 - thrB NOLOHH_03435 0.89 -3.2 606,799 + -5.1 606,829 + -3.5 606,846 + -2.2 606,863 + -4.8 606,867 + -4.3 606,868 - -1.9 606,868 - -1.4 606,868 - -3.2 606,868 - -1.5
Or see this region's nucleotide sequence