Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atl and ybaY are separated by 30 nucleotides ybaY and tesB are separated by 217 nucleotides tesB and amtB are separated by 47 nucleotides
NOLOHH_01180: atl - DNA base-flipping protein, at 127,641 to 127,952
atl
NOLOHH_01185: ybaY - Uncharacterized lipoprotein YbaY, at 127,983 to 128,555
ybaY
NOLOHH_01190: tesB - acyl-CoA thioesterase II, at 128,773 to 129,633
tesB
NOLOHH_01195: amtB - ammonium transporter AmtB, at 129,681 to 130,967
amtB
Position (kb) 128
129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 127.861 kb on + strand, within atl at 127.861 kb on + strand, within atl at 127.947 kb on + strand at 127.948 kb on - strand at 127.984 kb on + strand at 127.985 kb on - strand at 127.987 kb on + strand at 128.047 kb on - strand, within ybaY at 128.166 kb on - strand, within ybaY at 128.170 kb on - strand, within ybaY at 128.210 kb on + strand, within ybaY at 128.240 kb on + strand, within ybaY at 128.241 kb on - strand, within ybaY at 128.241 kb on - strand, within ybaY at 128.241 kb on - strand, within ybaY at 128.448 kb on - strand, within ybaY at 128.453 kb on + strand, within ybaY at 128.568 kb on - strand at 128.570 kb on + strand at 128.723 kb on + strand at 128.723 kb on + strand at 128.723 kb on + strand at 128.724 kb on - strand at 128.770 kb on + strand at 128.770 kb on + strand at 128.770 kb on + strand at 128.770 kb on + strand at 128.772 kb on + strand at 128.808 kb on - strand at 128.905 kb on + strand, within tesB at 128.905 kb on + strand, within tesB at 128.905 kb on + strand, within tesB at 128.905 kb on + strand, within tesB at 128.906 kb on - strand, within tesB at 128.906 kb on - strand, within tesB at 128.906 kb on - strand, within tesB at 128.906 kb on - strand, within tesB at 128.942 kb on + strand, within tesB at 128.942 kb on + strand, within tesB at 128.943 kb on - strand, within tesB at 128.982 kb on + strand, within tesB at 128.982 kb on + strand, within tesB at 128.983 kb on - strand, within tesB at 128.994 kb on + strand, within tesB at 128.998 kb on + strand, within tesB at 128.999 kb on - strand, within tesB at 128.999 kb on - strand, within tesB at 129.055 kb on - strand, within tesB at 129.082 kb on - strand, within tesB at 129.217 kb on - strand, within tesB at 129.217 kb on - strand, within tesB at 129.270 kb on + strand, within tesB at 129.388 kb on - strand, within tesB at 129.388 kb on - strand, within tesB at 129.402 kb on - strand, within tesB at 129.490 kb on - strand, within tesB at 129.511 kb on + strand, within tesB at 129.511 kb on + strand, within tesB at 129.511 kb on + strand, within tesB at 129.511 kb on + strand, within tesB at 129.512 kb on - strand, within tesB at 129.514 kb on - strand, within tesB at 129.568 kb on + strand at 129.568 kb on + strand at 129.569 kb on - strand at 129.570 kb on + strand at 129.632 kb on - strand at 129.690 kb on - strand at 129.691 kb on + strand at 129.691 kb on + strand at 129.692 kb on - strand at 129.789 kb on - strand at 129.789 kb on - strand at 129.841 kb on - strand, within amtB at 130.001 kb on + strand, within amtB at 130.001 kb on + strand, within amtB at 130.001 kb on + strand, within amtB at 130.001 kb on + strand, within amtB at 130.001 kb on + strand, within amtB at 130.001 kb on + strand, within amtB at 130.002 kb on - strand, within amtB at 130.002 kb on - strand, within amtB at 130.002 kb on - strand, within amtB at 130.005 kb on - strand, within amtB at 130.032 kb on + strand, within amtB at 130.069 kb on + strand, within amtB at 130.202 kb on + strand, within amtB at 130.203 kb on - strand, within amtB at 130.203 kb on - strand, within amtB at 130.276 kb on + strand, within amtB at 130.277 kb on - strand, within amtB at 130.277 kb on - strand, within amtB at 130.277 kb on - strand, within amtB at 130.357 kb on - strand, within amtB at 130.364 kb on - strand, within amtB at 130.364 kb on - strand, within amtB at 130.483 kb on + strand, within amtB at 130.484 kb on - strand, within amtB at 130.484 kb on - strand, within amtB at 130.484 kb on - strand, within amtB at 130.558 kb on - strand, within amtB at 130.558 kb on - strand, within amtB at 130.558 kb on - strand, within amtB at 130.571 kb on + strand, within amtB at 130.600 kb on - strand, within amtB at 130.609 kb on + strand, within amtB at 130.616 kb on - strand, within amtB at 130.616 kb on - strand, within amtB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 127,861 + atl NOLOHH_01180 0.71 +0.0 127,861 + atl NOLOHH_01180 0.71 -0.0 127,947 + -0.5 127,948 - +0.8 127,984 + -0.3 127,985 - -0.1 127,987 + -1.1 128,047 - ybaY NOLOHH_01185 0.11 +0.1 128,166 - ybaY NOLOHH_01185 0.32 +0.2 128,170 - ybaY NOLOHH_01185 0.33 +0.4 128,210 + ybaY NOLOHH_01185 0.40 +0.7 128,240 + ybaY NOLOHH_01185 0.45 -2.0 128,241 - ybaY NOLOHH_01185 0.45 -0.3 128,241 - ybaY NOLOHH_01185 0.45 -0.2 128,241 - ybaY NOLOHH_01185 0.45 -1.3 128,448 - ybaY NOLOHH_01185 0.81 +0.3 128,453 + ybaY NOLOHH_01185 0.82 -0.3 128,568 - -0.5 128,570 + -0.4 128,723 + -1.4 128,723 + -0.7 128,723 + +0.5 128,724 - +1.5 128,770 + +0.2 128,770 + -2.3 128,770 + +0.7 128,770 + -0.1 128,772 + +0.1 128,808 - +1.1 128,905 + tesB NOLOHH_01190 0.15 +1.3 128,905 + tesB NOLOHH_01190 0.15 -1.4 128,905 + tesB NOLOHH_01190 0.15 +0.2 128,905 + tesB NOLOHH_01190 0.15 -0.4 128,906 - tesB NOLOHH_01190 0.15 -1.9 128,906 - tesB NOLOHH_01190 0.15 -0.8 128,906 - tesB NOLOHH_01190 0.15 +0.9 128,906 - tesB NOLOHH_01190 0.15 +0.5 128,942 + tesB NOLOHH_01190 0.20 -0.7 128,942 + tesB NOLOHH_01190 0.20 +1.1 128,943 - tesB NOLOHH_01190 0.20 -0.7 128,982 + tesB NOLOHH_01190 0.24 +0.4 128,982 + tesB NOLOHH_01190 0.24 -0.4 128,983 - tesB NOLOHH_01190 0.24 +1.1 128,994 + tesB NOLOHH_01190 0.26 +0.1 128,998 + tesB NOLOHH_01190 0.26 +0.9 128,999 - tesB NOLOHH_01190 0.26 +0.2 128,999 - tesB NOLOHH_01190 0.26 +0.8 129,055 - tesB NOLOHH_01190 0.33 +0.9 129,082 - tesB NOLOHH_01190 0.36 +0.5 129,217 - tesB NOLOHH_01190 0.52 -1.9 129,217 - tesB NOLOHH_01190 0.52 +0.5 129,270 + tesB NOLOHH_01190 0.58 +1.0 129,388 - tesB NOLOHH_01190 0.71 +0.5 129,388 - tesB NOLOHH_01190 0.71 +0.4 129,402 - tesB NOLOHH_01190 0.73 -0.0 129,490 - tesB NOLOHH_01190 0.83 +0.1 129,511 + tesB NOLOHH_01190 0.86 -0.5 129,511 + tesB NOLOHH_01190 0.86 -0.2 129,511 + tesB NOLOHH_01190 0.86 +0.2 129,511 + tesB NOLOHH_01190 0.86 +0.6 129,512 - tesB NOLOHH_01190 0.86 -1.3 129,514 - tesB NOLOHH_01190 0.86 +0.8 129,568 + -0.1 129,568 + -0.4 129,569 - +0.6 129,570 + +0.2 129,632 - +0.6 129,690 - +1.0 129,691 + -0.2 129,691 + +0.1 129,692 - -1.4 129,789 - +0.6 129,789 - +0.2 129,841 - amtB NOLOHH_01195 0.12 -1.3 130,001 + amtB NOLOHH_01195 0.25 +1.3 130,001 + amtB NOLOHH_01195 0.25 -0.3 130,001 + amtB NOLOHH_01195 0.25 -2.1 130,001 + amtB NOLOHH_01195 0.25 +0.5 130,001 + amtB NOLOHH_01195 0.25 -1.3 130,001 + amtB NOLOHH_01195 0.25 -0.4 130,002 - amtB NOLOHH_01195 0.25 +0.1 130,002 - amtB NOLOHH_01195 0.25 +0.2 130,002 - amtB NOLOHH_01195 0.25 +1.1 130,005 - amtB NOLOHH_01195 0.25 -0.1 130,032 + amtB NOLOHH_01195 0.27 +0.7 130,069 + amtB NOLOHH_01195 0.30 +0.5 130,202 + amtB NOLOHH_01195 0.40 +1.6 130,203 - amtB NOLOHH_01195 0.41 -0.2 130,203 - amtB NOLOHH_01195 0.41 -0.0 130,276 + amtB NOLOHH_01195 0.46 -1.1 130,277 - amtB NOLOHH_01195 0.46 +0.3 130,277 - amtB NOLOHH_01195 0.46 -1.1 130,277 - amtB NOLOHH_01195 0.46 +0.0 130,357 - amtB NOLOHH_01195 0.53 +0.0 130,364 - amtB NOLOHH_01195 0.53 -0.2 130,364 - amtB NOLOHH_01195 0.53 -0.4 130,483 + amtB NOLOHH_01195 0.62 -0.8 130,484 - amtB NOLOHH_01195 0.62 +0.4 130,484 - amtB NOLOHH_01195 0.62 +1.1 130,484 - amtB NOLOHH_01195 0.62 +0.3 130,558 - amtB NOLOHH_01195 0.68 -3.1 130,558 - amtB NOLOHH_01195 0.68 +1.7 130,558 - amtB NOLOHH_01195 0.68 -0.7 130,571 + amtB NOLOHH_01195 0.69 +0.1 130,600 - amtB NOLOHH_01195 0.71 -0.4 130,609 + amtB NOLOHH_01195 0.72 +1.5 130,616 - amtB NOLOHH_01195 0.73 -3.4 130,616 - amtB NOLOHH_01195 0.73 -0.5
Or see this region's nucleotide sequence