Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00960

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybbP and ybbA overlap by 4 nucleotidesybbA and tesA are separated by 0 nucleotidestesA and ybbO are separated by 28 nucleotides NOLOHH_00955: ybbP - Uncharacterized ABC transporter permease YbbP, at 80,132 to 82,546 ybbP NOLOHH_00960: ybbA - ABC transporter ATP-binding protein, at 82,543 to 83,229 ybbA NOLOHH_00965: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 83,230 to 83,823 tesA NOLOHH_00970: ybbO - NADP(+)-dependent aldehyde reductase, at 83,852 to 84,622 ybbO Position (kb) 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 81.677 kb on + strand, within ybbPat 81.677 kb on + strand, within ybbPat 81.877 kb on - strand, within ybbPat 81.896 kb on - strand, within ybbPat 81.905 kb on + strand, within ybbPat 81.921 kb on + strand, within ybbPat 81.922 kb on - strand, within ybbPat 82.169 kb on + strand, within ybbPat 82.169 kb on + strand, within ybbPat 82.222 kb on - strand, within ybbPat 82.222 kb on - strand, within ybbPat 82.222 kb on - strand, within ybbPat 82.230 kb on + strand, within ybbPat 82.235 kb on - strand, within ybbPat 82.235 kb on - strand, within ybbPat 82.235 kb on - strand, within ybbPat 82.482 kb on - strandat 82.680 kb on + strand, within ybbAat 82.828 kb on + strand, within ybbAat 82.873 kb on - strand, within ybbAat 83.001 kb on + strand, within ybbAat 83.002 kb on - strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.009 kb on - strand, within ybbAat 83.361 kb on + strand, within tesAat 83.361 kb on + strand, within tesAat 83.361 kb on + strand, within tesAat 83.384 kb on + strand, within tesAat 83.388 kb on + strand, within tesAat 83.388 kb on + strand, within tesAat 83.594 kb on + strand, within tesAat 83.594 kb on + strand, within tesAat 83.595 kb on - strand, within tesAat 83.595 kb on - strand, within tesAat 83.611 kb on + strand, within tesAat 83.611 kb on + strand, within tesAat 83.611 kb on + strand, within tesAat 83.612 kb on - strand, within tesAat 83.612 kb on - strand, within tesAat 83.612 kb on - strand, within tesAat 83.612 kb on - strand, within tesAat 83.612 kb on - strand, within tesAat 83.612 kb on - strand, within tesAat 83.623 kb on + strand, within tesAat 83.625 kb on + strand, within tesAat 83.625 kb on + strand, within tesAat 83.625 kb on + strand, within tesAat 83.626 kb on - strand, within tesAat 83.626 kb on - strand, within tesAat 83.626 kb on - strand, within tesAat 83.708 kb on - strand, within tesAat 83.708 kb on - strand, within tesAat 83.739 kb on + strand, within tesAat 83.740 kb on - strand, within tesAat 83.804 kb on + strandat 83.805 kb on - strandat 83.807 kb on + strandat 83.807 kb on + strandat 83.808 kb on - strandat 83.845 kb on + strandat 83.846 kb on - strandat 83.869 kb on - strandat 83.869 kb on - strandat 83.974 kb on + strand, within ybbOat 84.088 kb on + strand, within ybbOat 84.110 kb on + strand, within ybbOat 84.110 kb on + strand, within ybbOat 84.110 kb on + strand, within ybbOat 84.110 kb on + strand, within ybbOat 84.110 kb on + strand, within ybbOat 84.111 kb on - strand, within ybbOat 84.111 kb on - strand, within ybbOat 84.111 kb on - strand, within ybbO

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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81,677 + ybbP NOLOHH_00955 0.64 +0.2
81,677 + ybbP NOLOHH_00955 0.64 -1.1
81,877 - ybbP NOLOHH_00955 0.72 +0.7
81,896 - ybbP NOLOHH_00955 0.73 +0.1
81,905 + ybbP NOLOHH_00955 0.73 -0.3
81,921 + ybbP NOLOHH_00955 0.74 +0.4
81,922 - ybbP NOLOHH_00955 0.74 +0.9
82,169 + ybbP NOLOHH_00955 0.84 +0.5
82,169 + ybbP NOLOHH_00955 0.84 +0.1
82,222 - ybbP NOLOHH_00955 0.87 -0.3
82,222 - ybbP NOLOHH_00955 0.87 +0.1
82,222 - ybbP NOLOHH_00955 0.87 -0.1
82,230 + ybbP NOLOHH_00955 0.87 -0.1
82,235 - ybbP NOLOHH_00955 0.87 -0.0
82,235 - ybbP NOLOHH_00955 0.87 -3.4
82,235 - ybbP NOLOHH_00955 0.87 +0.6
82,482 - +0.1
82,680 + ybbA NOLOHH_00960 0.20 +1.4
82,828 + ybbA NOLOHH_00960 0.41 -1.9
82,873 - ybbA NOLOHH_00960 0.48 -0.4
83,001 + ybbA NOLOHH_00960 0.67 +0.9
83,002 - ybbA NOLOHH_00960 0.67 +0.0
83,004 + ybbA NOLOHH_00960 0.67 -0.6
83,004 + ybbA NOLOHH_00960 0.67 +0.1
83,004 + ybbA NOLOHH_00960 0.67 +0.5
83,004 + ybbA NOLOHH_00960 0.67 +0.3
83,004 + ybbA NOLOHH_00960 0.67 -2.0
83,004 + ybbA NOLOHH_00960 0.67 +1.1
83,004 + ybbA NOLOHH_00960 0.67 -1.2
83,005 - ybbA NOLOHH_00960 0.67 +0.4
83,005 - ybbA NOLOHH_00960 0.67 +0.2
83,005 - ybbA NOLOHH_00960 0.67 -3.5
83,005 - ybbA NOLOHH_00960 0.67 +0.2
83,005 - ybbA NOLOHH_00960 0.67 -0.3
83,005 - ybbA NOLOHH_00960 0.67 -0.0
83,005 - ybbA NOLOHH_00960 0.67 +1.3
83,005 - ybbA NOLOHH_00960 0.67 +0.2
83,005 - ybbA NOLOHH_00960 0.67 +0.1
83,005 - ybbA NOLOHH_00960 0.67 -0.0
83,009 - ybbA NOLOHH_00960 0.68 +0.1
83,361 + tesA NOLOHH_00965 0.22 -2.6
83,361 + tesA NOLOHH_00965 0.22 -1.6
83,361 + tesA NOLOHH_00965 0.22 -0.3
83,384 + tesA NOLOHH_00965 0.26 +0.1
83,388 + tesA NOLOHH_00965 0.27 +0.4
83,388 + tesA NOLOHH_00965 0.27 +0.9
83,594 + tesA NOLOHH_00965 0.61 +0.7
83,594 + tesA NOLOHH_00965 0.61 +2.2
83,595 - tesA NOLOHH_00965 0.61 +0.2
83,595 - tesA NOLOHH_00965 0.61 +0.4
83,611 + tesA NOLOHH_00965 0.64 +0.5
83,611 + tesA NOLOHH_00965 0.64 -0.9
83,611 + tesA NOLOHH_00965 0.64 -2.2
83,612 - tesA NOLOHH_00965 0.64 +2.5
83,612 - tesA NOLOHH_00965 0.64 -0.1
83,612 - tesA NOLOHH_00965 0.64 +0.1
83,612 - tesA NOLOHH_00965 0.64 +0.7
83,612 - tesA NOLOHH_00965 0.64 -0.1
83,612 - tesA NOLOHH_00965 0.64 +0.2
83,623 + tesA NOLOHH_00965 0.66 +0.2
83,625 + tesA NOLOHH_00965 0.66 -0.1
83,625 + tesA NOLOHH_00965 0.66 +0.7
83,625 + tesA NOLOHH_00965 0.66 +0.4
83,626 - tesA NOLOHH_00965 0.67 +1.0
83,626 - tesA NOLOHH_00965 0.67 +0.6
83,626 - tesA NOLOHH_00965 0.67 -0.2
83,708 - tesA NOLOHH_00965 0.80 -2.5
83,708 - tesA NOLOHH_00965 0.80 -1.8
83,739 + tesA NOLOHH_00965 0.86 -0.4
83,740 - tesA NOLOHH_00965 0.86 -0.8
83,804 + -0.4
83,805 - -0.2
83,807 + -0.4
83,807 + +0.3
83,808 - -0.3
83,845 + +0.2
83,846 - -1.1
83,869 - +0.9
83,869 - +1.0
83,974 + ybbO NOLOHH_00970 0.16 -0.7
84,088 + ybbO NOLOHH_00970 0.31 -2.9
84,110 + ybbO NOLOHH_00970 0.33 -0.2
84,110 + ybbO NOLOHH_00970 0.33 -1.9
84,110 + ybbO NOLOHH_00970 0.33 -0.3
84,110 + ybbO NOLOHH_00970 0.33 +0.6
84,110 + ybbO NOLOHH_00970 0.33 -0.0
84,111 - ybbO NOLOHH_00970 0.34 -0.3
84,111 - ybbO NOLOHH_00970 0.34 -1.0
84,111 - ybbO NOLOHH_00970 0.34 -0.1

Or see this region's nucleotide sequence