Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00525

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00515 and NOLOHH_00520 are separated by 15 nucleotidesNOLOHH_00520 and NOLOHH_00525 are separated by 7 nucleotidesNOLOHH_00525 and NOLOHH_00530 overlap by 4 nucleotidesNOLOHH_00530 and fII are separated by 11 nucleotidesfII and NOLOHH_00540 are separated by 11 nucleotides NOLOHH_00515: NOLOHH_00515 - Phage minor tail protein G, at 8,328 to 8,750 _00515 NOLOHH_00520: NOLOHH_00520 - Tail tube protein, at 8,766 to 9,506 _00520 NOLOHH_00525: NOLOHH_00525 - Tail tube terminator protein, at 9,514 to 9,909 _00525 NOLOHH_00530: NOLOHH_00530 - Tail completion protein Z, at 9,906 to 10,484 _00530 NOLOHH_00535: fII - Head-tail connector protein FII, at 10,496 to 10,849 fII NOLOHH_00540: NOLOHH_00540 - DNA-packaging protein FI, at 10,861 to 11,259 _00540 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1at 8.567 kb on + strand, within NOLOHH_00515at 8.568 kb on - strand, within NOLOHH_00515at 8.568 kb on - strand, within NOLOHH_00515at 8.568 kb on - strand, within NOLOHH_00515at 8.568 kb on - strand, within NOLOHH_00515at 8.610 kb on - strand, within NOLOHH_00515at 8.841 kb on - strand, within NOLOHH_00520at 9.038 kb on + strand, within NOLOHH_00520at 9.489 kb on - strandat 9.528 kb on + strandat 9.528 kb on + strandat 9.528 kb on + strandat 9.528 kb on + strandat 9.654 kb on - strand, within NOLOHH_00525at 9.999 kb on - strand, within NOLOHH_00530at 10.236 kb on + strand, within NOLOHH_00530at 10.236 kb on + strand, within NOLOHH_00530at 10.237 kb on - strand, within NOLOHH_00530at 10.581 kb on - strand, within fII

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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8,567 + NOLOHH_00515 0.57 -0.4
8,568 - NOLOHH_00515 0.57 +0.2
8,568 - NOLOHH_00515 0.57 -0.0
8,568 - NOLOHH_00515 0.57 -1.6
8,568 - NOLOHH_00515 0.57 +0.3
8,610 - NOLOHH_00515 0.67 -1.0
8,841 - NOLOHH_00520 0.10 -0.3
9,038 + NOLOHH_00520 0.37 -1.0
9,489 - +0.4
9,528 + +0.1
9,528 + +1.5
9,528 + -0.4
9,528 + -0.3
9,654 - NOLOHH_00525 0.35 -0.8
9,999 - NOLOHH_00530 0.16 -0.5
10,236 + NOLOHH_00530 0.57 -0.8
10,236 + NOLOHH_00530 0.57 +0.6
10,237 - NOLOHH_00530 0.57 -0.2
10,581 - fII NOLOHH_00535 0.24 -0.1

Or see this region's nucleotide sequence