Strain Fitness in Erwinia amylovora T8 around OLJFJH_14370

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14360 and OLJFJH_14365 overlap by 1 nucleotidesOLJFJH_14365 and OLJFJH_14370 overlap by 8 nucleotidesOLJFJH_14370 and OLJFJH_14375 are separated by 0 nucleotides OLJFJH_14360: OLJFJH_14360 - electron transport complex subunit RsxA, at 3,035,032 to 3,035,613 _14360 OLJFJH_14365: OLJFJH_14365 - electron transport complex subunit RsxB, at 3,035,613 to 3,036,188 _14365 OLJFJH_14370: OLJFJH_14370 - electron transport complex subunit RsxC, at 3,036,181 to 3,038,541 _14370 OLJFJH_14375: OLJFJH_14375 - electron transport complex subunit RsxD, at 3,038,542 to 3,039,603 _14375 Position (kb) 3036 3037 3038 3039Strain fitness (log2 ratio) -1 0 1at 3035.260 kb on + strand, within OLJFJH_14360at 3035.861 kb on + strand, within OLJFJH_14365at 3035.995 kb on + strand, within OLJFJH_14365at 3036.149 kb on + strandat 3036.172 kb on + strandat 3036.712 kb on + strand, within OLJFJH_14370at 3037.450 kb on + strand, within OLJFJH_14370at 3037.483 kb on + strand, within OLJFJH_14370at 3037.483 kb on + strand, within OLJFJH_14370at 3037.713 kb on + strand, within OLJFJH_14370at 3038.539 kb on + strandat 3038.571 kb on + strandat 3038.577 kb on + strandat 3039.017 kb on + strand, within OLJFJH_14375at 3039.423 kb on + strand, within OLJFJH_14375

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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3,035,260 + OLJFJH_14360 0.39 +0.2
3,035,861 + OLJFJH_14365 0.43 +1.0
3,035,995 + OLJFJH_14365 0.66 -0.5
3,036,149 + -0.8
3,036,172 + +0.7
3,036,712 + OLJFJH_14370 0.22 +0.2
3,037,450 + OLJFJH_14370 0.54 -0.5
3,037,483 + OLJFJH_14370 0.55 -0.5
3,037,483 + OLJFJH_14370 0.55 -1.3
3,037,713 + OLJFJH_14370 0.65 +0.5
3,038,539 + -0.2
3,038,571 + -0.3
3,038,577 + -0.3
3,039,017 + OLJFJH_14375 0.45 -1.1
3,039,423 + OLJFJH_14375 0.83 -0.0

Or see this region's nucleotide sequence