Strain Fitness in Erwinia amylovora T8 around OLJFJH_13475

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_13465 and OLJFJH_13470 are separated by 150 nucleotidesOLJFJH_13470 and OLJFJH_13475 overlap by 1 nucleotidesOLJFJH_13475 and OLJFJH_13480 are separated by 14 nucleotides OLJFJH_13465: OLJFJH_13465 - BON domain-containing protein, at 2,834,237 to 2,834,551 _13465 OLJFJH_13470: OLJFJH_13470 - tryptophan synthase subunit alpha, at 2,834,702 to 2,835,508 _13470 OLJFJH_13475: OLJFJH_13475 - tryptophan synthase subunit beta, at 2,835,508 to 2,836,698 _13475 OLJFJH_13480: OLJFJH_13480 - bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF, at 2,836,713 to 2,838,074 _13480 Position (kb) 2835 2836 2837Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2834.586 kb on - strandat 2834.668 kb on - strandat 2834.816 kb on - strand, within OLJFJH_13470at 2834.869 kb on + strand, within OLJFJH_13470at 2834.902 kb on - strand, within OLJFJH_13470at 2834.985 kb on + strand, within OLJFJH_13470at 2834.986 kb on - strand, within OLJFJH_13470at 2834.986 kb on - strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.990 kb on - strand, within OLJFJH_13470at 2834.990 kb on - strand, within OLJFJH_13470at 2835.053 kb on - strand, within OLJFJH_13470at 2835.166 kb on - strand, within OLJFJH_13470at 2835.173 kb on - strand, within OLJFJH_13470at 2835.234 kb on + strand, within OLJFJH_13470at 2835.247 kb on + strand, within OLJFJH_13470at 2835.587 kb on - strandat 2835.727 kb on + strand, within OLJFJH_13475at 2835.727 kb on + strand, within OLJFJH_13475at 2835.728 kb on - strand, within OLJFJH_13475at 2835.731 kb on + strand, within OLJFJH_13475at 2835.731 kb on + strand, within OLJFJH_13475at 2835.731 kb on + strand, within OLJFJH_13475at 2835.731 kb on + strand, within OLJFJH_13475at 2835.732 kb on - strand, within OLJFJH_13475at 2835.732 kb on - strand, within OLJFJH_13475at 2835.867 kb on - strand, within OLJFJH_13475at 2835.919 kb on - strand, within OLJFJH_13475at 2835.996 kb on + strand, within OLJFJH_13475at 2835.997 kb on - strand, within OLJFJH_13475at 2836.065 kb on + strand, within OLJFJH_13475at 2836.143 kb on + strand, within OLJFJH_13475at 2836.144 kb on - strand, within OLJFJH_13475at 2836.145 kb on + strand, within OLJFJH_13475at 2836.145 kb on + strand, within OLJFJH_13475at 2836.145 kb on + strand, within OLJFJH_13475at 2836.145 kb on + strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.160 kb on + strand, within OLJFJH_13475at 2836.265 kb on - strand, within OLJFJH_13475at 2836.285 kb on + strand, within OLJFJH_13475at 2836.285 kb on + strand, within OLJFJH_13475at 2836.286 kb on - strand, within OLJFJH_13475at 2836.286 kb on - strand, within OLJFJH_13475at 2836.287 kb on + strand, within OLJFJH_13475at 2836.288 kb on - strand, within OLJFJH_13475at 2836.302 kb on + strand, within OLJFJH_13475at 2836.303 kb on - strand, within OLJFJH_13475at 2836.304 kb on + strand, within OLJFJH_13475at 2836.304 kb on + strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.384 kb on - strand, within OLJFJH_13475at 2836.605 kb on + strandat 2836.655 kb on + strandat 2836.655 kb on + strandat 2836.655 kb on + strandat 2836.655 kb on + strandat 2836.655 kb on + strandat 2836.656 kb on - strandat 2836.656 kb on - strandat 2836.656 kb on - strandat 2836.656 kb on - strandat 2836.656 kb on - strandat 2836.680 kb on - strandat 2836.687 kb on + strandat 2836.701 kb on + strandat 2836.718 kb on - strandat 2836.731 kb on - strandat 2836.793 kb on + strandat 2836.793 kb on + strandat 2836.941 kb on + strand, within OLJFJH_13480at 2836.941 kb on + strand, within OLJFJH_13480at 2836.942 kb on - strand, within OLJFJH_13480at 2836.945 kb on + strand, within OLJFJH_13480at 2837.079 kb on + strand, within OLJFJH_13480at 2837.152 kb on + strand, within OLJFJH_13480at 2837.152 kb on + strand, within OLJFJH_13480at 2837.240 kb on - strand, within OLJFJH_13480at 2837.413 kb on + strand, within OLJFJH_13480at 2837.689 kb on + strand, within OLJFJH_13480

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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2,834,586 - -0.1
2,834,668 - +0.8
2,834,816 - OLJFJH_13470 0.14 +0.6
2,834,869 + OLJFJH_13470 0.21 -1.9
2,834,902 - OLJFJH_13470 0.25 -2.4
2,834,985 + OLJFJH_13470 0.35 -2.5
2,834,986 - OLJFJH_13470 0.35 -1.4
2,834,986 - OLJFJH_13470 0.35 -1.5
2,834,989 + OLJFJH_13470 0.36 -3.1
2,834,989 + OLJFJH_13470 0.36 -1.9
2,834,989 + OLJFJH_13470 0.36 -2.6
2,834,989 + OLJFJH_13470 0.36 -1.8
2,834,989 + OLJFJH_13470 0.36 -2.4
2,834,990 - OLJFJH_13470 0.36 -1.9
2,834,990 - OLJFJH_13470 0.36 -3.0
2,835,053 - OLJFJH_13470 0.43 -3.9
2,835,166 - OLJFJH_13470 0.57 -0.6
2,835,173 - OLJFJH_13470 0.58 -3.1
2,835,234 + OLJFJH_13470 0.66 -2.6
2,835,247 + OLJFJH_13470 0.68 -3.9
2,835,587 - -2.5
2,835,727 + OLJFJH_13475 0.18 -0.1
2,835,727 + OLJFJH_13475 0.18 -2.3
2,835,728 - OLJFJH_13475 0.18 -2.5
2,835,731 + OLJFJH_13475 0.19 -3.0
2,835,731 + OLJFJH_13475 0.19 -2.1
2,835,731 + OLJFJH_13475 0.19 -0.0
2,835,731 + OLJFJH_13475 0.19 -2.2
2,835,732 - OLJFJH_13475 0.19 -2.1
2,835,732 - OLJFJH_13475 0.19 -2.7
2,835,867 - OLJFJH_13475 0.30 -0.7
2,835,919 - OLJFJH_13475 0.35 -2.2
2,835,996 + OLJFJH_13475 0.41 +0.2
2,835,997 - OLJFJH_13475 0.41 -4.1
2,836,065 + OLJFJH_13475 0.47 -0.4
2,836,143 + OLJFJH_13475 0.53 -2.1
2,836,144 - OLJFJH_13475 0.53 -1.4
2,836,145 + OLJFJH_13475 0.53 -2.1
2,836,145 + OLJFJH_13475 0.53 -0.8
2,836,145 + OLJFJH_13475 0.53 -2.4
2,836,145 + OLJFJH_13475 0.53 -3.1
2,836,146 - OLJFJH_13475 0.54 -3.8
2,836,146 - OLJFJH_13475 0.54 -3.0
2,836,146 - OLJFJH_13475 0.54 -1.9
2,836,146 - OLJFJH_13475 0.54 -0.5
2,836,146 - OLJFJH_13475 0.54 +1.0
2,836,160 + OLJFJH_13475 0.55 -1.6
2,836,265 - OLJFJH_13475 0.64 -3.7
2,836,285 + OLJFJH_13475 0.65 -1.6
2,836,285 + OLJFJH_13475 0.65 -0.8
2,836,286 - OLJFJH_13475 0.65 -3.3
2,836,286 - OLJFJH_13475 0.65 -2.3
2,836,287 + OLJFJH_13475 0.65 -0.4
2,836,288 - OLJFJH_13475 0.65 -1.9
2,836,302 + OLJFJH_13475 0.67 -2.7
2,836,303 - OLJFJH_13475 0.67 -2.3
2,836,304 + OLJFJH_13475 0.67 -0.4
2,836,304 + OLJFJH_13475 0.67 -1.3
2,836,305 - OLJFJH_13475 0.67 -1.1
2,836,305 - OLJFJH_13475 0.67 -3.2
2,836,305 - OLJFJH_13475 0.67 -2.1
2,836,305 - OLJFJH_13475 0.67 -2.5
2,836,305 - OLJFJH_13475 0.67 -1.8
2,836,305 - OLJFJH_13475 0.67 -1.8
2,836,305 - OLJFJH_13475 0.67 -1.1
2,836,384 - OLJFJH_13475 0.74 -2.4
2,836,605 + -1.6
2,836,655 + -1.3
2,836,655 + -3.0
2,836,655 + -1.9
2,836,655 + -0.6
2,836,655 + -1.4
2,836,656 - -4.4
2,836,656 - -2.7
2,836,656 - -2.2
2,836,656 - -1.2
2,836,656 - -2.0
2,836,680 - -0.6
2,836,687 + -2.6
2,836,701 + -2.6
2,836,718 - -0.8
2,836,731 - -0.5
2,836,793 + -1.6
2,836,793 + -1.4
2,836,941 + OLJFJH_13480 0.17 -2.0
2,836,941 + OLJFJH_13480 0.17 -1.8
2,836,942 - OLJFJH_13480 0.17 -2.5
2,836,945 + OLJFJH_13480 0.17 -1.2
2,837,079 + OLJFJH_13480 0.27 -1.8
2,837,152 + OLJFJH_13480 0.32 -2.9
2,837,152 + OLJFJH_13480 0.32 -0.7
2,837,240 - OLJFJH_13480 0.39 -1.2
2,837,413 + OLJFJH_13480 0.51 -1.3
2,837,689 + OLJFJH_13480 0.72 -1.9

Or see this region's nucleotide sequence