Strain Fitness in Erwinia amylovora T8 around OLJFJH_10685

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_10680 and OLJFJH_10685 are separated by 222 nucleotidesOLJFJH_10685 and OLJFJH_10690 are separated by 8 nucleotides OLJFJH_10680: OLJFJH_10680 - Uncharacterized conserved protein RhaS contains 28 RHS repeats, at 2,209,050 to 2,210,435 _10680 OLJFJH_10685: OLJFJH_10685 - Colicin immunity protein/pyocin immunity protein, at 2,210,658 to 2,210,855 _10685 OLJFJH_10690: OLJFJH_10690 - RHS domain-containing protein, at 2,210,864 to 2,212,357 _10690 Position (kb) 2210 2211Strain fitness (log2 ratio) -1 0 1 2at 2210.616 kb on - strandat 2210.654 kb on - strandat 2210.713 kb on - strand, within OLJFJH_10685at 2210.835 kb on + strand, within OLJFJH_10685at 2210.982 kb on + strandat 2210.982 kb on + strandat 2211.096 kb on - strand, within OLJFJH_10690at 2211.137 kb on - strand, within OLJFJH_10690at 2211.230 kb on - strand, within OLJFJH_10690at 2211.230 kb on - strand, within OLJFJH_10690at 2211.256 kb on + strand, within OLJFJH_10690at 2211.256 kb on + strand, within OLJFJH_10690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
remove
2,210,616 - +0.0
2,210,654 - -1.2
2,210,713 - OLJFJH_10685 0.28 -1.6
2,210,835 + OLJFJH_10685 0.89 -1.4
2,210,982 + +1.9
2,210,982 + -1.3
2,211,096 - OLJFJH_10690 0.16 -0.8
2,211,137 - OLJFJH_10690 0.18 -1.3
2,211,230 - OLJFJH_10690 0.24 -1.4
2,211,230 - OLJFJH_10690 0.24 -0.9
2,211,256 + OLJFJH_10690 0.26 +0.4
2,211,256 + OLJFJH_10690 0.26 -0.4

Or see this region's nucleotide sequence