Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_09415 and OLJFJH_09420 overlap by 20 nucleotides OLJFJH_09420 and OLJFJH_09425 overlap by 11 nucleotides OLJFJH_09425 and OLJFJH_09430 overlap by 1 nucleotides OLJFJH_09430 and OLJFJH_09435 are separated by 47 nucleotides OLJFJH_09435 and OLJFJH_09440 are separated by 2 nucleotides
OLJFJH_09415: OLJFJH_09415 - type III secretion protein, at 1,948,409 to 1,949,056
_09415
OLJFJH_09420: OLJFJH_09420 - type III secretion system protein, at 1,949,037 to 1,949,591
_09420
OLJFJH_09425: OLJFJH_09425 - type III secretion inner membrane ring lipoprotein SctJ, at 1,949,581 to 1,950,348
_09425
OLJFJH_09430: OLJFJH_09430 - type III secretion system inner rod subunit SctI, at 1,950,348 to 1,950,671
_09430
OLJFJH_09435: OLJFJH_09435 - type III secretion system needle complex protein, at 1,950,719 to 1,950,988
_09435
OLJFJH_09440: OLJFJH_09440 - PrgH/EprH family type III secretion apparatus protein, at 1,950,991 to 1,952,256
_09440
Position (kb) 1949
1950
1951 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1948.972 kb on + strand, within OLJFJH_09415 at 1949.091 kb on - strand at 1949.554 kb on + strand at 1949.568 kb on + strand at 1949.887 kb on - strand, within OLJFJH_09425 at 1949.956 kb on + strand, within OLJFJH_09425 at 1949.956 kb on + strand, within OLJFJH_09425 at 1950.026 kb on - strand, within OLJFJH_09425 at 1950.244 kb on - strand, within OLJFJH_09425 at 1950.510 kb on - strand, within OLJFJH_09430 at 1951.063 kb on + strand at 1951.171 kb on - strand, within OLJFJH_09440 at 1951.204 kb on + strand, within OLJFJH_09440 at 1951.245 kb on + strand, within OLJFJH_09440
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7 remove 1,948,972 + OLJFJH_09415 0.87 +0.9 1,949,091 - -0.3 1,949,554 + +0.2 1,949,568 + +3.6 1,949,887 - OLJFJH_09425 0.40 -1.3 1,949,956 + OLJFJH_09425 0.49 -1.3 1,949,956 + OLJFJH_09425 0.49 -1.2 1,950,026 - OLJFJH_09425 0.58 -0.0 1,950,244 - OLJFJH_09425 0.86 -1.0 1,950,510 - OLJFJH_09430 0.50 +1.5 1,951,063 + -0.3 1,951,171 - OLJFJH_09440 0.14 -1.9 1,951,204 + OLJFJH_09440 0.17 -0.8 1,951,245 + OLJFJH_09440 0.20 -0.5
Or see this region's nucleotide sequence